G271968


Basic Information

Item Value
gene id G271968
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52675119 ~ 52682633 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU308857
atcatagcccttataaaacgttttttttaactGATTAAGCACGGTCATACCTTATAGGATCCAGAGTTTTCCTGGTTAGGTTAACAGAGAAGGAAAAACTCAGGGCCCCAGGGGGTAAACATTGCCCCACCACCCTGGGACCTATGGGGCCACCAGTCTGCTTGGAGTtgtcaggtacagtgccttgcgaaagtattcggcccccttgaactctgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgcatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttactggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaactattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgaaattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcagatctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattgtgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtcgcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgtattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactggttgttgtcctatggacagaatctcccagctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaagggggctgaatagttttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccatttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttgtgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatatttcgcaaggcactgtatctaccacCCCCagttaacttcttgatgcacccatcccgttaacgggatcattTTCAAcgtccgctgaattgcagagcgccaaattcaaattaaattactaaaaatatttaattttcatggaatcacaagtgcaatatagcaaaacacagtttaccTCGTTGTTAATCCAactggcatgtcagatttcaaaaaaacttttcg

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308857 True 2001 lncRNA 0.42 2 52675119 52682633

Neighbor

gene id symbol gene type direction distance location
LOC110520175 LOC106586279 coding downstream 599443 51956334 ~ 52075676 (-)
LOC110520176 LOC106586280 coding downstream 832271 51817564 ~ 51844042 (-)
LOC100135875 LOC100135875 coding downstream 940820 51688835 ~ 51734299 (-)
LOC110520172 LOC106586277 coding downstream 994207 51630789 ~ 51680912 (-)
il1rl1 il1rl1 coding downstream 1055643 51596933 ~ 51619476 (-)
LOC110520181 adprh coding upstream 4290 52686923 ~ 52692178 (-)
LOC110520182 NA coding upstream 22319 52693956 ~ 52708816 (-)
gtdc1 gtdc1 coding upstream 98148 52780781 ~ 52826389 (-)
zeb2a LOC106586328 coding upstream 145150 52827783 ~ 52875770 (-)
LOC110520193 LOC106586318 coding upstream 701908 53384541 ~ 53394318 (-)
G271959 NA non-coding downstream 2004 52672693 ~ 52673115 (-)
G271930 NA non-coding downstream 21012 52653877 ~ 52654107 (-)
G271911 NA non-coding downstream 35306 52639494 ~ 52639813 (-)
G271901 LOC100136012 non-coding downstream 39741 52635150 ~ 52635378 (-)
G271701 NA non-coding downstream 224654 52445302 ~ 52450465 (-)
G272408 NA non-coding upstream 87699 52770332 ~ 52770543 (-)
G272412 NA non-coding upstream 90453 52773086 ~ 52773290 (-)
G272384 NA non-coding upstream 92960 52775593 ~ 52776534 (-)
G272417 NA non-coding upstream 106368 52789001 ~ 52789228 (-)
fgf9 NA other downstream 1200980 51471899 ~ 51478510 (-)
LOC110520160 LOC106586095 other downstream 1545809 51126600 ~ 51130404 (-)
LOC110520139 LOC106586251 other downstream 2232247 50440201 ~ 50442930 (-)
LOC110520121 LOC106581751 other downstream 2773581 49895327 ~ 49901575 (-)
G272713 LOC106586324 other upstream 567293 53249926 ~ 53251084 (-)
G274344 LOC106586294 other upstream 1997285 54679918 ~ 54682805 (-)
LOC110520227 plekhm3 other upstream 2420861 55068639 ~ 55122013 (-)
G275250 NA other upstream 2727510 55410143 ~ 55411487 (-)

Expression


Co-expression Network