G272021



Basic Information


Item Value
gene id G272021
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52769999 ~ 52770239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU308915
TATATATACTTTTCTTCTGTCAAACAGTAGTTACCTTGCCAGCTAGATCAGAcaactaaagagtagccagtttctgctctgcttgcttttacaactcAGAGAAAAAGTGCAACACAGACAGCAGCtacctctgttcatctctcctgtGCTGGTCTTATACgccagcctttcagaagctttgcCTTCAAACAGCCTGTCTGCTCTGCGGTGTCTCTGCGGTCCTAAATGCAGCAAGCTGAAA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU308915 True 241 lncRNA 0.45 1 52769999 52770239

Neighbor


gene id symbol gene type direction distance location
LOC110520180 LOC106586330 coding upstream 9623 52708371 ~ 52760376 (+)
LOC110520179 arl4c coding upstream 182951 52585011 ~ 52587048 (+)
LOC110520178 LOC106582420 coding upstream 202708 52508775 ~ 52567291 (+)
LOC110520177 LOC106586282 coding upstream 327390 52380931 ~ 52442609 (+)
LOC110520174 LOC106586278 coding upstream 1003013 51759256 ~ 51766986 (+)
LOC110520185 NA coding downstream 104689 52874928 ~ 52942773 (+)
acvr2aa LOC106586327 coding downstream 354417 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 coding downstream 404025 53174264 ~ 53235027 (+)
LOC110520189 LOC106586324 coding downstream 465304 53235543 ~ 53253493 (+)
kif5c LOC106586321 coding downstream 485177 53255416 ~ 53288980 (+)
G272020 NA non-coding upstream 831 52768958 ~ 52769168 (+)
G272018 NA non-coding upstream 1753 52767925 ~ 52768246 (+)
G271982 NA non-coding upstream 74301 52692303 ~ 52695698 (+)
G271955 NA non-coding upstream 98135 52671388 ~ 52671864 (+)
G271910 NA non-coding upstream 130064 52639625 ~ 52639935 (+)
G272023 NA non-coding downstream 1280 52771519 ~ 52771737 (+)
G272028 NA non-coding downstream 6627 52776866 ~ 52777730 (+)
G272070 NA non-coding downstream 56596 52826835 ~ 52827045 (+)
G272095 NA non-coding downstream 114073 52884312 ~ 52884541 (+)
LOC110520169 il1rl1 other upstream 1191316 51573980 ~ 51582567 (+)
G269291 rap2a other upstream 1869722 50898589 ~ 50900277 (+)
LOC110520146 ino80d other upstream 2165183 50601983 ~ 50618761 (+)
hoxd3a hoxd3 other upstream 2586973 50162278 ~ 50184327 (+)
G267529 NA other upstream 2914497 49836617 ~ 49855502 (+)
LOC110520190 LOC106586322 other downstream 521091 53291284 ~ 53339392 (+)
G272965 NA other downstream 878586 53648825 ~ 53652431 (+)
G273004 LOC106586313 other downstream 887222 53657461 ~ 53658683 (+)

Expression



Co-expression Network