G272446



Basic Information


Item Value
gene id G272446
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52878286 ~ 52878572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU309361
tggggaaggaggggaggtcCAAAGGACTATTGAGGCTGTTATGTCCATATAAAACCACTATCACATAAGAATTCATTGGCCAATGACTTCAATAATGATAGTTGCTGAGTGAACCGCAGCTAGTTTATCTAGCAGTTTATCAGACAACATTTGTTGTGTCGTTGATGGAAGTTGTTTGCTGTTGGATGCCAGTGGACAACATTCCGATGCTGAACCACATCAGAGAGAACAGCCTTGTGGGTGCTCAATGACTAGCTGGCATTTTGACGTGACAAGTTCAAGCAATT

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU309361 True 287 lncRNA 0.43 1 52878286 52878572

Neighbor


gene id symbol gene type direction distance location
zeb2a LOC106586328 coding downstream 2516 52827783 ~ 52875770 (-)
gtdc1 gtdc1 coding downstream 51897 52780781 ~ 52826389 (-)
LOC110520182 NA coding downstream 169540 52693956 ~ 52708816 (-)
LOC110520181 adprh coding downstream 186108 52686923 ~ 52692178 (-)
LOC110520175 LOC106586279 coding downstream 802610 51956334 ~ 52075676 (-)
LOC110520193 LOC106586318 coding upstream 505969 53384541 ~ 53394318 (-)
LOC110520195 LOC106586316 coding upstream 659105 53537677 ~ 53562438 (-)
ubxd2 ubxd2 coding upstream 782528 53661100 ~ 53663978 (-)
LOC110520198 LOC106586311 coding upstream 793193 53671765 ~ 53746869 (-)
rab3gap1 LOC106586310 coding upstream 938539 53817111 ~ 53864985 (-)
G272445 NA non-coding downstream 185 52877758 ~ 52878101 (-)
G272417 NA non-coding downstream 89058 52789001 ~ 52789228 (-)
G272384 NA non-coding downstream 101752 52775593 ~ 52776534 (-)
G272412 NA non-coding downstream 104996 52773086 ~ 52773290 (-)
G272408 NA non-coding downstream 107743 52770332 ~ 52770543 (-)
G272461 NA non-coding upstream 16825 52895397 ~ 52896059 (-)
G272463 NA non-coding upstream 19360 52897932 ~ 52898246 (-)
G272464 NA non-coding upstream 19810 52898382 ~ 52898611 (-)
G272470 NA non-coding upstream 26921 52905493 ~ 52905775 (-)
G272491 NA non-coding upstream 58859 52937431 ~ 52937699 (-)
il1rl1 il1rl1 other downstream 1278056 51596933 ~ 51619476 (-)
fgf9 NA other downstream 1404147 51471899 ~ 51478510 (-)
LOC110520160 LOC106586095 other downstream 1748976 51126600 ~ 51130404 (-)
LOC110520139 LOC106586251 other downstream 2435414 50440201 ~ 50442930 (-)
G272713 LOC106586324 other upstream 371354 53249926 ~ 53251084 (-)
G274344 LOC106586294 other upstream 1801346 54679918 ~ 54682805 (-)
LOC110520227 plekhm3 other upstream 2224922 55068639 ~ 55122013 (-)
G275250 NA other upstream 2531571 55410143 ~ 55411487 (-)
si:dkey-91i10.3 LOC106586420 other upstream 4392210 57270782 ~ 57297762 (-)

Expression



Co-expression Network