G272461



Basic Information


Item Value
gene id G272461
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52895397 ~ 52896059 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU309376
tgtAGGCCTCTGTTTGAATTAGTATACCTTTTTATAGATAAGTTAAACTGTTGGCAGACACATAAGCATAAATGATAGTTTTGCGTTTGTAATGACGACTCGTCAGAGAGCTTGGTGATGGGTATACATGTCCAAATTCAGCACTGCCATTTCACCACAGAATAGCAAATCAATTAAGGAGGTTTAATATGCTAAAGTTGAATCACTAGTTAGTGATAATATGAAAACCATGCACGAGTTCCTCTCACGTGACCAttgtcttctctttctctctccacagaAGTGTTTGACACAGTCCCTACTTATTTGGCTCTTAATCCATACAAAAACCGTGTTTGTCAGTAAACATGTTGTGTGGACCAGATCCACTATCACAGGGCAGGGTGGGTTGGTTGGACTGGCACTAATACCCTTAGCAAAGCTATCAGCTGAGTAATTTGGGTAATTGCTACGATCGGAAACTGTTTATTTCATTTGCATCCTGTATACTCCAGAGCCCTCTATAACAAAAGAAAACGCCTCATCCTTTTTCCTCAACAATTAGGGTTTCTTCTTCTTGTGCCAGCATCAGCAAATAAAACTTGTTTGCATCAGCAAGTAAAGAGGTTTGTGGTGTTTTATAACTATTGTTATTCACAGGCAGCGTTTTGGACGCAATAATGG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU309376 True 663 lncRNA 0.40 1 52895397 52896059

Neighbor


gene id symbol gene type direction distance location
zeb2a LOC106586328 coding downstream 19627 52827783 ~ 52875770 (-)
gtdc1 gtdc1 coding downstream 69008 52780781 ~ 52826389 (-)
LOC110520182 NA coding downstream 186651 52693956 ~ 52708816 (-)
LOC110520181 adprh coding downstream 203219 52686923 ~ 52692178 (-)
LOC110520175 LOC106586279 coding downstream 819721 51956334 ~ 52075676 (-)
LOC110520193 LOC106586318 coding upstream 488482 53384541 ~ 53394318 (-)
LOC110520195 LOC106586316 coding upstream 641618 53537677 ~ 53562438 (-)
ubxd2 ubxd2 coding upstream 765041 53661100 ~ 53663978 (-)
LOC110520198 LOC106586311 coding upstream 775706 53671765 ~ 53746869 (-)
rab3gap1 LOC106586310 coding upstream 921052 53817111 ~ 53864985 (-)
G272446 NA non-coding downstream 16825 52878286 ~ 52878572 (-)
G272445 NA non-coding downstream 17296 52877758 ~ 52878101 (-)
G272417 NA non-coding downstream 106169 52789001 ~ 52789228 (-)
G272384 NA non-coding downstream 118863 52775593 ~ 52776534 (-)
G272412 NA non-coding downstream 122107 52773086 ~ 52773290 (-)
G272463 NA non-coding upstream 1873 52897932 ~ 52898246 (-)
G272464 NA non-coding upstream 2323 52898382 ~ 52898611 (-)
G272470 NA non-coding upstream 9434 52905493 ~ 52905775 (-)
G272491 NA non-coding upstream 41372 52937431 ~ 52937699 (-)
G272499 NA non-coding upstream 52046 52948105 ~ 52948705 (-)
il1rl1 il1rl1 other downstream 1295167 51596933 ~ 51619476 (-)
fgf9 NA other downstream 1421258 51471899 ~ 51478510 (-)
LOC110520160 LOC106586095 other downstream 1766087 51126600 ~ 51130404 (-)
LOC110520139 LOC106586251 other downstream 2452525 50440201 ~ 50442930 (-)
G272713 LOC106586324 other upstream 353867 53249926 ~ 53251084 (-)
G274344 LOC106586294 other upstream 1783859 54679918 ~ 54682805 (-)
LOC110520227 plekhm3 other upstream 2207435 55068639 ~ 55122013 (-)
G275250 NA other upstream 2514084 55410143 ~ 55411487 (-)
si:dkey-91i10.3 LOC106586420 other upstream 4374723 57270782 ~ 57297762 (-)

Expression



Co-expression Network