G272119


Basic Information

Item Value
gene id G272119
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52930638 ~ 52930948 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU309017
ATTAGTTCAGACGCTCCTGGTCACAGGGTCCTGTATGGCTGCGCGCGAAAACATCACAGACACAGGTGGTGTCCCGTTCCCAATCTCCCTCATCCTTAAACGGCTTTGCAGCTGCCATcaagaaaaaaaaggaaaaaaggaGAAAACATCTGTCCGGAGATTGCGTTTTTGTAAGACTGATTAACGAGCGTAAAGCCTCTGTTGCCAATCCCCCACCTTGTCGGTCTGAGTAGTTTCCAAGCATCGCCTGATGCAGGGCAGAATTTACACAGAAAGATATGTAAAATCATATAGGAATAACAGACCTTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309017 True 311 lncRNA 0.46 1 52930638 52930948

Neighbor

gene id symbol gene type direction distance location
LOC110520180 LOC106586330 coding upstream 170262 52708371 ~ 52760376 (+)
LOC110520179 arl4c coding upstream 343590 52585011 ~ 52587048 (+)
LOC110520178 LOC106582420 coding upstream 363347 52508775 ~ 52567291 (+)
LOC110520177 LOC106586282 coding upstream 488029 52380931 ~ 52442609 (+)
LOC110520174 LOC106586278 coding upstream 1163652 51759256 ~ 51766986 (+)
acvr2aa LOC106586327 coding downstream 193708 53124656 ~ 53172428 (+)
LOC110520187 LOC106586325 coding downstream 243316 53174264 ~ 53235027 (+)
LOC110520189 LOC106586324 coding downstream 304595 53235543 ~ 53253493 (+)
kif5c LOC106586321 coding downstream 324468 53255416 ~ 53288980 (+)
LOC110520190 LOC106586322 coding downstream 360336 53291284 ~ 53339392 (+)
G272117 NA non-coding upstream 2992 52927406 ~ 52927646 (+)
G272113 NA non-coding upstream 10320 52920115 ~ 52920318 (+)
G272109 NA non-coding upstream 16503 52913526 ~ 52914135 (+)
G272098 NA non-coding upstream 31155 52899199 ~ 52899483 (+)
G272096 NA non-coding upstream 43696 52886710 ~ 52886942 (+)
G272135 NA non-coding downstream 18049 52948997 ~ 52949213 (+)
G272158 NA non-coding downstream 47992 52978940 ~ 52979145 (+)
G272185 NA non-coding downstream 84902 53015850 ~ 53016276 (+)
G272256 NA non-coding downstream 186280 53117228 ~ 53117462 (+)
G272257 NA non-coding downstream 187017 53117965 ~ 53118365 (+)
LOC110520169 il1rl1 other upstream 1351955 51573980 ~ 51582567 (+)
G269291 rap2a other upstream 2030361 50898589 ~ 50900277 (+)
LOC110520146 ino80d other upstream 2325822 50601983 ~ 50618761 (+)
hoxd3a hoxd3 other upstream 2747612 50162278 ~ 50184327 (+)
G267529 NA other upstream 3075136 49836617 ~ 49855502 (+)
G272965 NA other downstream 717877 53648825 ~ 53652431 (+)
G273004 LOC106586313 other downstream 726513 53657461 ~ 53658683 (+)

Expression


Co-expression Network