G272511



Basic Information


Item Value
gene id G272511
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52964743 ~ 52964948 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU309426
ATCTTAACTCTTCCACTAGTTTATAGGAGGACTAGATAGAGAACTTTAGATGATGTGCCtttgaaatgtattgaaaatgacgATCAGATAAATAGACTGTAAATAATCCCTAAAAAAAAATAGCATTTTCAGGTAATGCTTAGTAATCAAAACCTTTGAATGTATAACACTACTCATCTTATTATAACAGCTGTTGATATTAATTC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU309426 True 206 lncRNA 0.29 1 52964743 52964948

Neighbor


gene id symbol gene type direction distance location
zeb2a LOC106586328 coding downstream 88973 52827783 ~ 52875770 (-)
gtdc1 gtdc1 coding downstream 138354 52780781 ~ 52826389 (-)
LOC110520182 NA coding downstream 255997 52693956 ~ 52708816 (-)
LOC110520181 adprh coding downstream 272565 52686923 ~ 52692178 (-)
LOC110520175 LOC106586279 coding downstream 889067 51956334 ~ 52075676 (-)
LOC110520193 LOC106586318 coding upstream 419593 53384541 ~ 53394318 (-)
LOC110520195 LOC106586316 coding upstream 572729 53537677 ~ 53562438 (-)
ubxd2 ubxd2 coding upstream 696152 53661100 ~ 53663978 (-)
LOC110520198 LOC106586311 coding upstream 706817 53671765 ~ 53746869 (-)
rab3gap1 LOC106586310 coding upstream 852163 53817111 ~ 53864985 (-)
G272509 NA non-coding downstream 2952 52961565 ~ 52961791 (-)
G272499 NA non-coding downstream 16038 52948105 ~ 52948705 (-)
G272491 NA non-coding downstream 27044 52937431 ~ 52937699 (-)
G272470 NA non-coding downstream 58968 52905493 ~ 52905775 (-)
G272464 NA non-coding downstream 66132 52898382 ~ 52898611 (-)
G272558 LOC106582599 non-coding upstream 64538 53029486 ~ 53029746 (-)
G272560 NA non-coding upstream 66563 53031511 ~ 53031788 (-)
G272596 NA non-coding upstream 133719 53098667 ~ 53098877 (-)
G272613 NA non-coding upstream 150020 53114968 ~ 53115301 (-)
G272618 NA non-coding upstream 152797 53117745 ~ 53118228 (-)
il1rl1 il1rl1 other downstream 1364513 51596933 ~ 51619476 (-)
fgf9 NA other downstream 1490604 51471899 ~ 51478510 (-)
LOC110520160 LOC106586095 other downstream 1835433 51126600 ~ 51130404 (-)
LOC110520139 LOC106586251 other downstream 2521871 50440201 ~ 50442930 (-)
G272713 LOC106586324 other upstream 284978 53249926 ~ 53251084 (-)
G274344 LOC106586294 other upstream 1714970 54679918 ~ 54682805 (-)
LOC110520227 plekhm3 other upstream 2138546 55068639 ~ 55122013 (-)
G275250 NA other upstream 2445195 55410143 ~ 55411487 (-)
si:dkey-91i10.3 LOC106586420 other upstream 4305834 57270782 ~ 57297762 (-)

Expression



Co-expression Network