Gene
RNA
| Item | Value |
|---|---|
| gene id | G272659 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 53218853 ~ 53219510 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| methyl-CpG-binding domain protein 5-like isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU309577 | True | 658 | lncRNA | 0.52 | 1 | 53218853 | 53219510 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| zeb2a | LOC106586328 | coding | downstream | 343083 | 52827783 ~ 52875770 (-) |
| gtdc1 | gtdc1 | coding | downstream | 392464 | 52780781 ~ 52826389 (-) |
| LOC110520182 | NA | coding | downstream | 510107 | 52693956 ~ 52708816 (-) |
| LOC110520181 | adprh | coding | downstream | 526675 | 52686923 ~ 52692178 (-) |
| LOC110520175 | LOC106586279 | coding | downstream | 1143177 | 51956334 ~ 52075676 (-) |
| LOC110520193 | LOC106586318 | coding | upstream | 165031 | 53384541 ~ 53394318 (-) |
| LOC110520195 | LOC106586316 | coding | upstream | 318167 | 53537677 ~ 53562438 (-) |
| ubxd2 | ubxd2 | coding | upstream | 441590 | 53661100 ~ 53663978 (-) |
| LOC110520198 | LOC106586311 | coding | upstream | 452255 | 53671765 ~ 53746869 (-) |
| rab3gap1 | LOC106586310 | coding | upstream | 597601 | 53817111 ~ 53864985 (-) |
| G272673 | NA | non-coding | downstream | 29586 | 53189036 ~ 53189267 (-) |
| G272672 | NA | non-coding | downstream | 30408 | 53188231 ~ 53188445 (-) |
| G272665 | NA | non-coding | downstream | 38108 | 53180431 ~ 53180745 (-) |
| G272660 | NA | non-coding | downstream | 44251 | 53174280 ~ 53174602 (-) |
| G272618 | NA | non-coding | downstream | 100625 | 53117745 ~ 53118228 (-) |
| G272729 | NA | non-coding | upstream | 52043 | 53271553 ~ 53324337 (-) |
| G272741 | NA | non-coding | upstream | 68833 | 53288343 ~ 53291080 (-) |
| G272774 | NA | non-coding | upstream | 117170 | 53336680 ~ 53337670 (-) |
| G272832 | NA | non-coding | upstream | 154030 | 53373540 ~ 53375521 (-) |
| G273298 | NA | non-coding | upstream | 177569 | 53397079 ~ 53397297 (-) |
| il1rl1 | il1rl1 | other | downstream | 1618623 | 51596933 ~ 51619476 (-) |
| fgf9 | NA | other | downstream | 1744714 | 51471899 ~ 51478510 (-) |
| LOC110520160 | LOC106586095 | other | downstream | 2089543 | 51126600 ~ 51130404 (-) |
| LOC110520139 | LOC106586251 | other | downstream | 2775981 | 50440201 ~ 50442930 (-) |
| G272713 | LOC106586324 | other | upstream | 30416 | 53249926 ~ 53251084 (-) |
| G274344 | LOC106586294 | other | upstream | 1460408 | 54679918 ~ 54682805 (-) |
| LOC110520227 | plekhm3 | other | upstream | 1883984 | 55068639 ~ 55122013 (-) |
| G275250 | NA | other | upstream | 2190633 | 55410143 ~ 55411487 (-) |
| si:dkey-91i10.3 | LOC106586420 | other | upstream | 4051272 | 57270782 ~ 57297762 (-) |
