G272832


Basic Information

Item Value
gene id G272832
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53373540 ~ 53375521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU309775
ACTTCTTCCATGAATTGTACAGCATTTATTTAAGGCAACATCTGGCATGATATGTTGGCATTCAGGTCACAGTACAAAAGTCCTGGCAAAATATTTAAAAGGGAAAATCTAGTATTGCCTGATTGGTTTAAAGGGACACAACATGTTTTAGCCCTTATGTTACCCCATAAAAAAACGAAATGTAATTTATAAAATGTTAACAGAGCAAACTACAGTAGGTAAAAAATGTTGCTTTCTGTAAATCATGCTTCACTGTTTTCCTTTTGCTGCTTGGCTGGAGTCCTACTGAACAGACAGtgtggtagggagggaggagggcagacctgggttcagatactatttgaaatctttcaaatactttgatcgtttgctttagtctgcctgAAGTAATATATGAGCATGGTTtgccattttgggactattctattggtccatTGAGCCAAACGATGATTTAAAATAGTaaatgaacccaggtctggaggGGGGAAGTGACCAGTCTCCTTTATGTCTCGGGCGGTCAGCCTAAATAAATCAGAAATCCTGGAGAACAATAACACTGTATTTGCTAACTCTGCATTTTTCCCGCCTGGACAGGCGACCACACCGCCAACAGAGAGTGATGGATGAGAAACATATCACAGAACAGAGCACAGTACAAACATCAGAGGGACATGTCACAAGAACGTACAAAAACATTAAAACACTTGTGAGAAAAAGTCTCCTGAAGAGCACGTAGTGTCAGTAATTAATTGTGTGCGCACAAAGCAAGTCATTTATTGTTGCCTCTCGCTAAAACTGAAATGACGAGACATAAAAACATGCTATTTGTCCTGCAGTTACAGCACAGCTTCCAAAGCCTAGGCCAAACAAAGTGCTGCACTGAGGTATGTGGGTAGCTGTATCATGTGGAAAGTCAGATTCATTTTTCATCATCAGTCAATTTTGAAGCTAAAATAGACCTGTAATTAACTTTTATCCTTTTTTTTTAGGTTTTGAGGAAATAGTCTTCCCACAACAGAAACACCAAAGGGTTAAGTGTTTGTTTGATAAGCGCCCGGCTCTCTTTCCATGTCGGTAAAAATACTTTCTGCATACTAGACGTAAAAGGACGCGCAGCGCCTATGTCACCTGTTCCTGCTGGAAAATAAAAGATGTAGTCTACACTTACATGCTATTATATAAACCTACCGGCGTAACGTTTCACACAGACATATTCACCTTCTAACAACAATGttccataaaaaaataaatactatgtatatgtacatatgtGTCAAACATACAACATGGCGCGTGGACTCgcaaatgtgaaaatgtaaaAACATAAAAACGTTAAACCAGACAAATCCTCATAGAAGCTGAAGCTGTTCTTCAATTCTTCCTCATCGCTGGAACATGTTGAAACTCTTACAGTGTATAGCCTACTGTCGAATCCAAACATGCCACAACACATTTCAAGGTTTACAGTTTCCCCTCCTTCTGTCCCGGTGCAGAAGACTAGTAGGGGGAGAATTATGTCATTTCATACTTGGATGTTTATTATGTTTTATCCTTCAAGATTGACAGCCATATGGCCTGTGTTTTAGAAGCAGTATCAGTGTCAAGTTCTAAGTGCACATTTTATTGAAACCAAGCATAATGATGAAAGGGAATCAAAACTGGATTCCTTTTTAATTAAAAGGAAAATAAACTGTCAAAAACTGCAGTGAGTACTATTTCCATAGGGTGTAGATTGAATCGATTAACAGTTGGATCGGAATACATTAACAGTTGGGTCAGGCCTTCAATTGGTAAAGACAATTGTATATGTCAGTATCTCTCTCCACTTCTCAAACATAGCTGGAGATGAGGAGGGTGAGGAAAAGGAGGCAGTATATTAGTCTGTAGCTCTGTGGGATTCCTGTGGTGCCGCTGAGAGGTGAGGTGGTGGCGAACACGGCCTCCGTCTCATTCCAGGGGAGAGGAAGGTTACAGATATTGCC

Function

NR:

description
ly6/PLAUR domain-containing protein 6 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309775 True 1982 lncRNA 0.40 1 53373540 53375521
Loading

Neighbor

gene id symbol gene type direction distance location
zeb2a LOC106586328 coding downstream 497770 52827783 ~ 52875770 (-)
gtdc1 gtdc1 coding downstream 547151 52780781 ~ 52826389 (-)
LOC110520182 NA coding downstream 664794 52693956 ~ 52708816 (-)
LOC110520181 adprh coding downstream 681362 52686923 ~ 52692178 (-)
LOC110520175 LOC106586279 coding downstream 1297864 51956334 ~ 52075676 (-)
LOC110520193 LOC106586318 coding upstream 9020 53384541 ~ 53394318 (-)
LOC110520195 LOC106586316 coding upstream 162156 53537677 ~ 53562438 (-)
ubxd2 ubxd2 coding upstream 285579 53661100 ~ 53663978 (-)
LOC110520198 LOC106586311 coding upstream 296244 53671765 ~ 53746869 (-)
rab3gap1 LOC106586310 coding upstream 441590 53817111 ~ 53864985 (-)
G272774 NA non-coding downstream 35870 53336680 ~ 53337670 (-)
G272729 NA non-coding downstream 49203 53271553 ~ 53324337 (-)
G272741 NA non-coding downstream 82460 53288343 ~ 53291080 (-)
G272659 NA non-coding downstream 154030 53218853 ~ 53219510 (-)
G272673 NA non-coding downstream 184273 53189036 ~ 53189267 (-)
G273298 NA non-coding upstream 21558 53397079 ~ 53397297 (-)
G273454 NA non-coding upstream 215918 53591439 ~ 53591680 (-)
G273464 NA non-coding upstream 226557 53602078 ~ 53602367 (-)
G273493 LOC106586314 non-coding upstream 270412 53645933 ~ 53651951 (-)
G273523 NA non-coding upstream 390839 53766360 ~ 53766580 (-)
G272713 LOC106586324 other downstream 122456 53249926 ~ 53251084 (-)
il1rl1 il1rl1 other downstream 1773310 51596933 ~ 51619476 (-)
fgf9 NA other downstream 1899401 51471899 ~ 51478510 (-)
LOC110520160 LOC106586095 other downstream 2244230 51126600 ~ 51130404 (-)
G274344 LOC106586294 other upstream 1304397 54679918 ~ 54682805 (-)
LOC110520227 plekhm3 other upstream 1727973 55068639 ~ 55122013 (-)
G275250 NA other upstream 2034622 55410143 ~ 55411487 (-)
si:dkey-91i10.3 LOC106586420 other upstream 3895261 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 4027463 57402984 ~ 57403575 (-)

Expression

G272832 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.3.
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G272832 Expression in each Bioproject

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G272832 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
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Co-expression Network