G273039


Basic Information

Item Value
gene id G273039
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53730078 ~ 53731261 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU310018
gtcggagtcagaggccgagtcttctctggtctctactcctcccgttacggggtctgagacgccgaagcttcccaccattagctctgacaaattgaaaactctagtcattggcgactccattacccgcagtattagacttaaaacgaatcatccagcgatcatacactgtttaccggggggcagggctaccgacgttaaggctaatctgaagatggtgctggctaaagctaaaactggcgagtgtagagagtatagagacattgttatccacgtcggcaccaacgatgttaggatgaaacagtcagatcaccaagcgcaacatagcttctgcgtgtaaatcagctagaaagatgtgtcggcatcgagtaattgtctctggccccctcccagttagggggagtgatgagctctacagcagagtctcacaactcaatcgctggttgaaaactgttttctgcccctcccaaaagatagaatttgtagataattggc
>TU310019
gtcggagtcagaggccgagtcttctctggtctctactcctcccgttacggggtctgagacgccgaagcttcccaccattagctctgacaaattgaaaactctagtcattggcgactccattacccgcagtattagacttaaaacgaatcatccagcgatcatacactgtttaccggggggcagggctaccgacgttaaggctaatctgaagatggtgctggctaaagctaaaactggcgagtgtagagagtatagagacattgttatccacgtcggcaccaacgatgttaggatgaaacagtcagatcaccaagcgcaacatagcttctgcgtgtaaatcagctagaaagatgtgtcggcatcgagtaattgtctctggccccctcccagttagggggagtgatgagctctacagcagagtctcacaactcaatcgctggttgaaaactgttttctgcccctcccaaaagatagaatttgtagataattggccctctttctgggactcacccacaaacaggaccacgcctgacctgctgaggagtgacggactccatcctagctggaggggtgctctcattttatctaccaacatagacagggctctaactcctctagctccacaatgaaatagggtgcaggccaggcagcaggctgttagccagcctgccagcatagtggagtctgccactagcacagtcagtgtagtcagctcagctatcaccattgagaccgtgtctgtgcctcgacctaggttgggcaaaactaaacatggcggtgttcgccttagcaatctcactaggataaagaccacctccattcctgtcattattgaaagagatcatgatacctcacatctcaaaatagggctacttaatgttagatcccttacttcaaaggcaattattgtcaatgaactaatcactgatcataatcttgatgtgattggcctgactgaaacatggcttaagcctgatgaatttactgtgttaaatgaggcctcacctcctggctacactagtgaccatatccccgacgcatcccgcaaaggcggaggtgttgctaacatttacgatagcaaaattcaatttacaacaaaaaaaataacgttttcgtcttttgagcttctagtcatgaaatctatgcagcctactcaatcactttttatagctactgtttacagg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU310018 False 492 lncRNA 0.49 1 53730078 53730569
TU310019 True 1184 lncRNA 0.47 1 53730078 53731261

Neighbor

gene id symbol gene type direction distance location
parp14rs3 LOC106586314 coding upstream 83653 53631769 ~ 53646425 (+)
LOC110520196 NA coding upstream 100793 53600172 ~ 53629285 (+)
LOC110520194 LOC106586317 coding upstream 280196 53436028 ~ 53449882 (+)
LOC110520191 LOC106586320 coding upstream 354404 53347656 ~ 53375674 (+)
LOC110520190 LOC106586322 coding upstream 390686 53291284 ~ 53339392 (+)
LOC110520200 LOC106586309 coding downstream 134207 53865468 ~ 53869538 (+)
LOC110520202 LOC106586307 coding downstream 139489 53870750 ~ 53883922 (+)
LOC110520204 LOC106586306 coding downstream 173049 53904310 ~ 53990481 (+)
LOC110520205 LOC106586291 coding downstream 313716 54044977 ~ 54149088 (+)
LOC110520208 LOC106586301 coding downstream 477614 54208875 ~ 54317829 (+)
G273038 NA non-coding upstream 1843 53727955 ~ 53728235 (+)
G273028 NA non-coding upstream 13144 53716670 ~ 53716934 (+)
G273026 NA non-coding upstream 14742 53714497 ~ 53715336 (+)
G273024 NA non-coding upstream 18922 53710888 ~ 53711156 (+)
G273023 NA non-coding upstream 20577 53709272 ~ 53709501 (+)
G273056 NA non-coding downstream 25315 53756576 ~ 53756782 (+)
G273093 LOC106586310 non-coding downstream 85859 53817120 ~ 53818537 (+)
G273113 LOC106586310 non-coding downstream 126145 53857406 ~ 53859972 (+)
G273119 NA non-coding downstream 133894 53865155 ~ 53865423 (+)
G273173 NA non-coding downstream 230760 53962021 ~ 54025301 (+)
G273004 LOC106586313 other upstream 71395 53657461 ~ 53658683 (+)
G272965 NA other upstream 77647 53648825 ~ 53652431 (+)
LOC110520187 LOC106586325 other upstream 506813 53174264 ~ 53235027 (+)
acvr2aa LOC106586327 other upstream 557650 53124656 ~ 53172428 (+)
G273094 LOC106586310 other downstream 110003 53841264 ~ 53841617 (+)
G274592 NA other downstream 1143138 54874399 ~ 54875115 (+)
LOC110520231 dbr1 other downstream 1643285 55371759 ~ 55375526 (+)
G275542 LOC106586374 other downstream 2168933 55900194 ~ 55900743 (+)
G275553 LOC107595854 other downstream 2184068 55915329 ~ 55916133 (+)

Expression


Co-expression Network