G274339 (LOC106586295)


Basic Information

Item Value
gene id G274339
gene name LOC106586295
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54669362 ~ 54678112 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU311488
gggatttgatctaacaaccttttggttactagtccaacgctctaaccactaggctacctgccgataaTAGGCATCAATGGGATCAAAACAATAGTCAAACATGTCACAGTTTAGCAACATGTAGCAGAATATAATGTAAATGCTGTGCAATTAAACTAATAGAAGTAGTGTTATAACAAGGATGTTACACATTTTATAATTAATATGGAAACAAGACATTTTCCTCTTGAAGCAAACAGTGAATATTTTGAAATTCCAAAGACCATGATGTCCAAATGCAACCAAAGGCTTTCAAAACCAAAAGGCCTAACTTGCTACATTATAGCCAGTCTCTTACAACAGTCCATTCAAAGTTCAAAGCTTTCCTAATACAGGACAATCAGATGGTAAAATAAACTGAGACACTGTTGACAAACTAGTATTAACATCCCCATTTATTGTGTACAAACATTACAGACTGAGGATGAATGGAAATGTACATTTCTAGGATGAACTAAATAATATACATTGAGTGTAAAAACATTACTATTTTGTCTTgaccgttcaccctctgaatgccacagatacacaatccatgtctcaattgtctcaagaatccttctttaacctgtctcctcccctttatctacgctgatcaaagtggatttaacaagtaacatcaataagggatcatagctttcatctggattcacctggtcagactATATCATGgaaagcaggtgttcctaatgtttaatgCAGTCAGTGTAAATTATTTAGGTCTTTTGGAAAGATgcttacagtatcataacatgGTCATGTTTTCAATATTAGTCTTTGAGGGGAAGGTTGTTGGTGGTTAACACATTATTTTAACACCAGTGAAGTTTCTATTGCCAGACCTTTTGACAGAACACAGTGTGACATGTGGTAATTCAGTGTGAAAGACGTCACTGGTTGGTACAGACATGGGTGGTAAAGCTATATTTCAACACAGCCACAGGCCATAGGCTAGCAACAAGGCTATACACTAGTCTCCTCCAGTTGAGCAGGTTCCTccttttgtctctgtgtctgggtgCCTGGATGGaagacacaacaacacatcaaccAGAATGTTTCGTCAAAATGTTAATTTAAGTTGTAGTTCACTACAAAATCAAAGTTGGTCATATGTTTGGAGACTTTAAAAGCTCTCTAATGCAGAGAAGGATCAGCATCCCATGTGAAGGCTAGCTCTGCCTCAGTCCAAAACGAAAGAGAAAGGTAGGTACTGTCTAAGTCAGACATTTTAGATGATTCCTCAATGTCCCATTCCTTTGGGATTGGGTTGGATGTCTTGTTTATGGAGAGTCTATTCAAGAGGGAGTGTCTCCTTACCGTTTGGTCTTCGACAGTAGAGCCCAAGAAGTCCCAGAATTCCTAGGGTGGCAGCCATTGTAATCACCCCTCTCACCACTGTCTCGGTGCCCATCCCTATGAAAACTTATGTTAAATTATATTAAACATGGCAACCTCTCCAGCATGGTAACCTATTTATTTTGTTACACTAGGCCTATGCCAGGGGAAAGCAGAGGTCCAGTGAGGAAAAATGTGTTTGGTTTGAGATAGGTTGGAACAGATTAGATCAATTTGAAGAGAGTCTATCATAACTAATTGTTACCTGTCATTGAAGACATTTTTGTCTGTGTGGGGAGTGTGAGGGTCAGGGAGGCTGTCGCTCTGAGCATGCCCTCTGTGAACACAGCACACTGCCAGTGCAGCTGGTCCCTATGGAGGCTGGGCAGGGTCACACTGAGCATCCTGTTGGGGTgactctctgtcaggatgtcctGTTTGACCAGCAGCCCCCTGCTCCCTTCCATCCTCAGCCAGGCTAGGGTCACAGGGTCGGTGCTCACCTCCGACACCTCACATCTCAGGACCACCGGATGATTCCTGGGGAATCCACTAGGCGGAACTGCAGAGACTGAAATGGAAATCTGGAGATCATTGGGGATCTGTCATCTGTTCTCTCAAAGATTAGTAGAATAGATTATTCTGAAAAATGCACCGTAGATATTTAAAATGATAATGCTCACCCTTTAGGGTTACCACATTGATAGAGGCAACTAGGAGGTTTTCAAAATAGCAATTGAACCTTCCAGAATCTTCAAACTTCACTGGTGAGAAGTAGAGAGGGAAGTAGTATCCATTGAAGTCCCCGTATGAAAATCTCTCATTAAACGTGTCATTGGAGCCGTACATTGTAGTTCTCACAAGGTGAACCTCTTTAGCTGTAGATAATGGGGTCCAGGACCATGATGCATGGATGTACTCATCTGATGTCATACAAAGCAGTGTCACCAGAGAGCTGTTGGAGCTCTCTCTGTACATTGTGAGAGTGGCATCAGACGAAACTGTGGAGAAAACCATAGCGTTGTTCAGTCAGAGGGGAAAGTTGAATTTTATTTCAATCCAAAGTCTAAATGGCATTACGGGTCCATTTTATTGTAAATGTATCACATGTGATCACCATTTATCCATTTAAAATCAGACCAATATTATTGATTATCAATGACTACTGATCAAGAGGACAACATTCACATTTCACATAAAAGTTTTGATATTTCAGTTAGATAAGAACACATTTTGTACCTTCCTCAATTCTGACAGCATTAGAGACATTATATAACAGTGTTCCATTCTGTCTAAAAGTGCAGTAGTATGCCCCCTGACTGTCCGGATGAACACTGCGGATGATCATGTGGACAGTGTTGTTGTAGAACAGCGTGGTGATAGAAGTGGaatctccatctctttcccactGCAGTGTGGCCCCATCTGGTAGGCTGGACACCTCGCAACTAACACTCACATCAGAACCCAGACGAAATGAAGGCCAAAAGGAAGGTGTAACTGAAAAAACATGCAATTTAAAGATGTTTACAATGTAAACTTACTGTCCAAACTAAAACAATAATGTGAATGAACAATTACGGTGAAGAAATTAATTTTGGAAGCTGGCTTTCGAAACGATTTAATCATTGGAAAGTATTTTGTCATTATGGAAGATTCACGATGGCGTGTCTGTACAAAACAGACACAGAATCTACTTACTTTTTGTGGTGAAGATCTCAATCTTAACCAATGGGACATTTGCTCTTACCAACAAAAACACCCCTGCACATTCAAACTTCGGCTTCACTGTTACGTCAAAGTCTTTGCTGCAAGAAAAGTACTCTGTGAAAGGTGGACTAACCACTAGCCTAGAGGATATTGCTCTGGCTATTTGAATCTCTGAGTATCTCCCATCATGTGAGGTCCACTCCCAGCTGAACTCTGACCAGTGAGGTTGAGCCAGGTCTGACACAGACAGGTGCACACTCTCTGTCTGACCAGAGATCAAGAAGATgctcctcttc

Function

NR:

description
uncharacterized protein LOC110520220

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311488 True 3383 lncRNA 0.41 2 54669362 54678112

Neighbor

gene id symbol gene type direction distance location
LOC110520215 LOC106586297 coding downstream 9681 54646623 ~ 54659681 (-)
LOC110520214 LOC106586297 coding downstream 23020 54639230 ~ 54646342 (-)
LOC110520218 NA coding downstream 32884 54633738 ~ 54636478 (-)
LOC110520216 LOC106586300 coding downstream 44818 54617528 ~ 54624544 (-)
LOC110520213 ube2f coding downstream 75282 54504064 ~ 54594080 (-)
LOC110520226 LOC106582378 coding upstream 369406 55047518 ~ 55050859 (-)
LOC110520227 plekhm3 coding upstream 393681 55068639 ~ 55122013 (-)
idh1 LOC106586335 coding upstream 453282 55131394 ~ 55146388 (-)
armc8 armc8 coding upstream 679255 55357367 ~ 55371667 (-)
LOC110520232 LOC106586350 coding upstream 697803 55375915 ~ 55382161 (-)
G274412 NA non-coding downstream 61990 54607167 ~ 54607372 (-)
G274208 NA non-coding downstream 351576 54315329 ~ 54317786 (-)
G274198 NA non-coding downstream 380091 54281582 ~ 54289271 (-)
G274126 NA non-coding downstream 440185 54174850 ~ 54229177 (-)
LOC110520207 LOC106586304 non-coding downstream 477709 54181672 ~ 54191829 (-)
G274531 NA non-coding upstream 130707 54808819 ~ 54809081 (-)
G274536 NA non-coding upstream 136190 54814302 ~ 54814543 (-)
G274538 NA non-coding upstream 141156 54819268 ~ 54819476 (-)
G274552 NA non-coding upstream 152493 54830605 ~ 54831374 (-)
G274564 NA non-coding upstream 163595 54841707 ~ 54841923 (-)
G272713 LOC106586324 other downstream 1418278 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 1960546 52693956 ~ 52708816 (-)
il1rl1 il1rl1 other downstream 3069132 51596933 ~ 51619476 (-)
fgf9 NA other downstream 3195223 51471899 ~ 51478510 (-)
LOC110520160 LOC106586095 other downstream 3540052 51126600 ~ 51130404 (-)
G274344 LOC106586294 other upstream 1806 54679918 ~ 54682805 (-)
G275250 NA other upstream 732031 55410143 ~ 55411487 (-)
si:dkey-91i10.3 LOC106586420 other upstream 2592670 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 2724872 57402984 ~ 57403575 (-)

Expression


Co-expression Network