G274828


Basic Information

Item Value
gene id G274828
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55356782 ~ 55357693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU312015
ggaactttctaagtgaccccaaactttagaaTAGTAGTGTATGTAgacacttcccactgggcacagacatcattttaaaaaatcgtttttatttacatttggttgagatatcaggtaaaaataaataaaagttccCTTACATTGATAACTTTTTGTAAACCCAAacagttttccacattgaatCAACATCATCAAATAGATTTTTAaacaaccagtttttgcccagtggttGGTTTGGTGCTGAGATGAtgaatgaggttgaaaagtggcagAATTACCCTTTAAGAGGGAGATCTAAGGGCGGGCACCAACCTGCCAAAGACAGTCTAGGTTTAGGAGGCAATGCCTAGTGGGGGATGAGGGGAATATAGGTCTGTTGTGaaaaagcagacagacagattgtaCAGTGAAGAGTTCCCACATCAAACCAATTTTTAGCCATCCAGCCATTCGTGCCTTCTCCTTCGAACACACACTGCTAGTCCACATACACAGCACATATCCATTCTCTCACATATCATTCACAGATGGGAATGCTGTGATTTCTAAACCATTGACTATTCAATTATGAACACcgcacttttattttgaaaagtaagttatgtatttatttgtgttAGTAAATTATATATTCTGGCAATATCTTCTGTTGAAAATGCAGAGGAGTGTTCTGGCCCTTTTCCATCCATCACTAGTTGTTCAAccagacatttccacttcaacaGCTTCATATGAAAGCCCACATGCACCAACACACACTATTGCCATGTCCCCAGCATCATCCGCAACCCATGAACAATTGTCAACCTCTGGATAACACAGACTTATCCTACAATGCTCAGATACTGCTAAATTGGTCAGAGGCCTAATTTTACTAGCATCGTCTGATGCGCTGTGTACTTGGAATGTGTA
>TU312016
ggaactttctaagtgaccccaaactttagaaTAGTAGTGTATGTAgacacttcccactgggcacagacatcattttaaaaaatcgtttttatttacatttggttgagatatcaggtaaaaataaataaaagttccCTTACATTGATAACTTTTTGTAAACCCAAacagttttccacattgaatCAACATCATCAAATAGATTTTTAaacaaccagtttttgcccagtggttGGTTTGGTGCTGAGATGAtgaatgaggttgaaaagtggcagAATTACCCTTTAAGAGGGAGATCTAAGGGCGGGCACCAACCTGCCAAAGACAGTCTAGGTTTAGGAGGCAATGCCTAGTGGGGGATGAGGGGAATATAGGTCTGTTGTGaaaaagcagacagacagattgtaCAGTGAAGAGTTCCCACATCAAACCAATTTTTAGCCATCCAGCCATTCGTGCCTTCTCCTTCGAACACACACTGCTAGTCCACATACACAGCACATATCCATTCTCTCACATATCATTCACAGATGGGAATGCTGTGATTTCTAAACCATTGACTATTCAATTATGAACACcgcacttttattttgaaaagtaagttatgtatttatttgtgttAGTAAATTATATATTCTGGCAATATCTTCTGTTGAAAATGCAGAGGAGTGTTCTGGCCCTTTTCCATCCATCACTAGTTGTTCAAccagacatttccacttcaacaGCTTCATATGAAAGCCCACATGCACCAACACACACTATTGCCATGTCCCCAGCATCATCCGCAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU312015 False 912 lncRNA 0.40 1 55356782 55357693
TU312016 True 790 lncRNA 0.39 1 55356782 55357571

Neighbor

gene id symbol gene type direction distance location
kcnh3 LOC103481844 coding upstream 1132 55157443 ~ 55355650 (+)
LOC110520225 LOC106586338 coding upstream 311739 55021730 ~ 55045043 (+)
creb1b creb1 coding upstream 355049 54993444 ~ 55001733 (+)
LOC110520223 klf7 coding upstream 425239 54859520 ~ 54931543 (+)
LOC110520222 LOC106586294 coding upstream 667284 54673232 ~ 54689498 (+)
LOC110520231 dbr1 coding downstream 14066 55371759 ~ 55375526 (+)
lcmt2 NA coding downstream 22978 55380671 ~ 55388722 (+)
LOC110520234 LOC106586346 coding downstream 48178 55405871 ~ 55411555 (+)
LOC110504295 LOC106586344 coding downstream 72500 55430193 ~ 55496588 (+)
rftn2 rftn2 coding downstream 384004 55741697 ~ 55779314 (+)
G274865 NA non-coding upstream 8641 55347885 ~ 55348141 (+)
G274864 NA non-coding upstream 9535 55347010 ~ 55347247 (+)
G274862 NA non-coding upstream 14508 55342070 ~ 55342274 (+)
G274850 NA non-coding upstream 33707 55322749 ~ 55323075 (+)
G274876 NA non-coding downstream 18220 55375913 ~ 55378994 (+)
G274885 NA non-coding downstream 29339 55387032 ~ 55387567 (+)
G274892 NA non-coding downstream 40197 55397890 ~ 55398203 (+)
G274895 NA non-coding downstream 56408 55414101 ~ 55414384 (+)
G274592 NA other upstream 481667 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 1515165 53841264 ~ 53841617 (+)
G273004 LOC106586313 other upstream 1698099 53657461 ~ 53658683 (+)
G272965 NA other upstream 1704351 53648825 ~ 53652431 (+)
LOC110520190 LOC106586322 other upstream 2020256 53291284 ~ 53339392 (+)
G275542 LOC106586374 other downstream 542501 55900194 ~ 55900743 (+)
G275553 LOC107595854 other downstream 557636 55915329 ~ 55916133 (+)
G277296 NA other downstream 1906874 57264567 ~ 57264892 (+)
G277973 NA other downstream 2432041 57789734 ~ 57790332 (+)

Expression


Co-expression Network