G274876


Basic Information

Item Value
gene id G274876
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55375913 ~ 55378994 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU312068
AGTTCATATTCACTGCACACATGGCGCAATAGCACATCTTTATTGAACAACACTTTACAGAGGAGCTGAGGGGAGTCTTTCCCACATCGTGTGGACTTCATCATTATTACACTAACCTGTGATCATAGAATAAGAGTTCATGAATGAGTGACTTAATCATGAGGACAGCCCATGAAACAATTAGCTTTGAAATGAAGTAGAGCTCATCACATAGATTGGTGTCCTTCGTGACTAATTCCAGCGTAATGATATACGTACTCTAGTTAGTAAAATCAACAGTTTCAATCAAATTAGATGACAAAATATACTGCATTTCACAAGAAGAGCTCCTTACAACTGTACAAAGAGCAGAATTACATTGTGCAGAAAGAGTTAATGGTTACAAGCTGTTGAGGTCCAGGGAGATGCTTTACTTTTAATTTTTAGCTGGTATGGCGAACTCTGGAAATTCCTTTGGTCTCTACTGTGTTAAGTGAATCAGCTTTTAGTTTTCTTgcaccttatttgtggaacaatcaACCATCGACCGTTTGTTTGCGGGTTATGATATACCGTATTGAAAAaatcacgacagctgtgatggaaacaggtcgtttcggtacaattttataaaatgCCGACAgaatttgttcgttcgacatggtgggatcttttttgtGTCTTAATCaattatgtgagaaatggtggtggaaacacctttattcccaaatattgatataataaccatcatatggaAGTAAACTTGGGAGTCGTGACGATATGgtgtgttgtcctcccactatgactctgGGAAACCATgccgtttattaggctacagatgaaataatatatgatgaacttcacaggttgGTGAAAGCGCAtagtgatcttgatgctcctttccaatacatatcgagggtcttattctggtgacataatCGACGCTTGACTGCCGTTTAACAAAAACAATTATTCTTGCTCCCATCCATAATAATCCCATTATATAATCTACCAGCCCAGCCTACGCACATATTCACataaatctgtcaccaattggatggaaacctagctagtgtgtTTTTCTGTATATTTTCTGTCACTctgggctcatctgtaaaagagaccttggtctgagTATGAtcccctgataaaataaaggttcaattaaaaacaaCGTACATTTCTGCCAAACACGCCAAAGCAAACCCAAAACAAATAACAAAAGAAGAAAATGGGAGTAGGCActtcttgttttgtttttaaacCCCTCGTAAGCAGCCTTATTCTTCTTAGCTAAGCCTTGGACACATCCCAAATGGATCCTTCCCTACACCAGACACTCCTGTAGATCTTGGAGAGGTGGAAGCAATATGGCAAAAATAATCCACCTATTTGGCCAGGTTAAGCAACTATCATAAagcattaacctttctgatctgtTCAGATCTACATTAATATGTCTAGGGGTTAAGGGTCAATTCAGAATCCATCAACAGATTGAGTAGCTCTGTCACCAAAGCTTGCCGTCTCACTCCAGTGCTTTGAACAGCATCAGCTCATTAGTCACGTTAAAAGCGTTTGTTTACAATGTTTTCAATGACATCAACTCTTAAGCAGTAAGAAACAAGACAAATGAGGAACAGCAGAACATATCATGTAGATCATGGCCCTTGCATTCACAACATGACAGGCCAGATACCAGATGCATTGGTTTCCTACCTACAGGACTGCAAGTCTAGAGGGGTttgagtagcctggtcccagatctgcttgTGCTGTCTTGCAAACTCCTATAGTCATTGTTGAGCAGAGGgagacagatctgggatcaggctagggTTTGAGATCAATACCAACTATAAGTTATCACTACAAGGGGCAAGGCATTTCTGCTGACGATGTAAACTGACCAGGAGAGACTGTGGATATCACCAATTATGCACTAGACAGTGGATTGATTGTTAGAAACAGTGAAGGTTTCCAGTGAAGGTTTCCAGTGAAGGTCTAGCCAGACAGACATGGCCTGGAGCATGACTCAGTCCCAACAGCAAATAAATACTGGACTCTGGGTTCTTTAGTGTACATCTACATCTGTGCGTGGAAGATAGATAAATGAGGAGGAGGTGCCTGGATAATACCAGACTGGCACTAGCAGCATGATGTTTCACAACACCGCTGCTCTAAGgagtaataattataataatatagcCTAGGGATTCGAATAAATAAAGGGCACCAGAGGAAATAAGGGCATTAGAAGAGGCAATAAACTGTGGTTATCCTCCGTCTTGTCTTTTGGGATTGTGGGTAACCTGTGCCATCTAACATGGGTTACTCTATCTGTAGGGACTGGGGAGTATCTGGAATGGCACAGGCCAAGGCTTCAGAGTTGGGTTAAGGTTGTCCAGGTTGTCTGGGGCTCATGCCAGAGGAGGGTGATGAGAGGGCATTTAATACAGCTCTGCCCCTCTGTGAGGTGCACAAATGGGAATACTATAGGGAGGGAGTATGACCTGCATCCCATTCACTCTTTCATTCCCTCATCCTTCAGTCTCCCttgctccatctctcctttcttccctctctgCCACTCAAGAACTGACACTGCAGCGATTGCATAATCAAATGGAACCATGATTGAAATTAAACGAGACAGACAAAATGTAAAACAGCCACGATTAGCGCTCAATAATATACAAAGTATTCACTCTCTCACGGTCTTTTTCTTCCTCATGTCCGTCAGTCTTTGTCCAAAATCTCTCTCTGGCGTCGGTTGGTGAGGCAAATACTCATAAAAGACAACCGTCCAACTCAaactccctctttctttcttcccctctttctatttctctcaatagtggtctgtctgtctgtggatgggagggagggtggagggggtgTCCCCCTGCCCGACCCCAGAGGTTGGGAACAGGGATGGCAGGATGGCGGTGAAGCAGTCCtagttccctcctcctcctccacagcagGATCGGGTGTTGTGGGCTTCAGGATCCTGTAAGTTCACTCCCCTGTGTCGCGCTGCGTGTGTAGGATTCTGGGTGTCCGTTTTGGGCATCTTTTTG

Function

NR:

description
ras-related protein Rab-5B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU312068 True 3062 lncRNA 0.43 2 55375913 55378994

Neighbor

gene id symbol gene type direction distance location
LOC110520231 dbr1 coding upstream 1055 55371759 ~ 55375526 (+)
kcnh3 LOC103481844 coding upstream 20263 55157443 ~ 55355650 (+)
LOC110520225 LOC106586338 coding upstream 330870 55021730 ~ 55045043 (+)
creb1b creb1 coding upstream 374180 54993444 ~ 55001733 (+)
LOC110520223 klf7 coding upstream 444370 54859520 ~ 54931543 (+)
lcmt2 NA coding downstream 1677 55380671 ~ 55388722 (+)
LOC110520234 LOC106586346 coding downstream 26877 55405871 ~ 55411555 (+)
LOC110504295 LOC106586344 coding downstream 51199 55430193 ~ 55496588 (+)
rftn2 rftn2 coding downstream 362703 55741697 ~ 55779314 (+)
LOC110520236 LOC106586369 coding downstream 413365 55792359 ~ 55800630 (+)
G274828 NA non-coding upstream 18220 55356782 ~ 55357693 (+)
G274865 NA non-coding upstream 27772 55347885 ~ 55348141 (+)
G274864 NA non-coding upstream 28666 55347010 ~ 55347247 (+)
G274885 NA non-coding downstream 8038 55387032 ~ 55387567 (+)
G274892 NA non-coding downstream 18896 55397890 ~ 55398203 (+)
G274895 NA non-coding downstream 35107 55414101 ~ 55414384 (+)
G274913 NA non-coding downstream 60748 55439742 ~ 55440949 (+)
G274914 NA non-coding downstream 64595 55443589 ~ 55444242 (+)
G274592 NA other upstream 500798 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 1534296 53841264 ~ 53841617 (+)
G273004 LOC106586313 other upstream 1717230 53657461 ~ 53658683 (+)
G272965 NA other upstream 1723482 53648825 ~ 53652431 (+)
G275542 LOC106586374 other downstream 521200 55900194 ~ 55900743 (+)
G275553 LOC107595854 other downstream 536335 55915329 ~ 55916133 (+)
G277296 NA other downstream 1885573 57264567 ~ 57264892 (+)
G277973 NA other downstream 2410740 57789734 ~ 57790332 (+)
G280315 NA other downstream 4673722 60052716 ~ 60054417 (+)

Expression


Co-expression Network