G275250


Basic Information

Item Value
gene id G275250
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55410143 ~ 55411487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU312498
AATTCTTTATTATAAACTTTTAATTGAAAAGTACATTTTCCCTCCTGTACTATAGCACATCCCATTATTCACAGTAGTCTCTTTCAGTCAGGAGGAGCAGTCCAAAGAACACAGggctgaaatggcaccctatgccctttaAAAGTGCACAACttctgaccagaaccctatgggagCGGGTCAAAAAGTAACACACTACTTAGGGAAAagtgtgccatttcagacacactcagtctgagaggagaggcagagcaaGAGGGGTGGATGGTGGTGGGAGGCAGAGCAAGAGGGGTGGATGGTAGTGGGAGGCAGAGCAAGAGGGGTGGATGGTGGTGGGAGGCAGAGCAAGAGGGGTGGATGGTGGTGGGAGGCAGAGCAAGAGGGGTGGATGGTGGTGGGAGGCAGAGCAAGAGGGTGGATGGTGGTGGGAGGCAGAGCAAGCTGGAGATGGAGTCTCCAGACGAGGATGATATCCTTGTCACCCTAACGAGGAGGCAGCTAGGTAGCTCCAGAAGTACACTCAGTGGCCTTTCTTTCAGCAGACAGAATGCTCACTCATAACCTTACACCACAAATAATACATCTAAACATCATCTAATTCAACAAAAGCAAAAAACTAAAAATGTTGTTTGTTCTTTCCTATTTACAAAGTGTTTTGACCGAATCTTTTAAGGTGTCGGAGGGGATAAAATCCCTCAAGGTTAAATTAAACGACCTAGTACAGTACCACATACATAAAACTGTTATCAGAACAGGGAGGGTGATAGTATTCCAGTCTTGCTGATGTCCATGAGAAGTTGTTGACTCCAGAGTCCTTTGATTCCAGGAAAGCTCCTCTTCTAGAGCTCAGTCAGGTGTGATGGGTTTAACATTGGAAATGGGAGCTTTCATGATCCAAGATGTATGTGAGTGGTTGACAATTAGTTGACATTAAAAAGGTATGTTGACTTGAAGATCCAAACTCTCCAAATTGAAGCAAATAAGTCATCTGCAATTTGAGGGGGAATTAAGGTGGCAGTAAAATAATTTTTGGGACAAATACAGCATTAAATATAACCAggacttctttaaaaaaaataacatcaaGCCACCTTcagaatataaaaaaataaaacaaatcaaccCATCCTGAGATCAAAAAATAAATACACCCCTAAGCGTGctcctttgtttgtgtgtgtgtttttttgtgtggcgCAGAACTCAGTCCAGACTGTCTTTTGGTGTGTCAGTATCCCTGTAGTCCATTGTAAACCTTCTGTACTGACGATTGTTTCAGAATCCC
>TU312499
AATTCTTTATTATAAACTTTTAATTGAAAAGTACATTTTCCCTCCTGTACTATAGCACATCCCATTATTCACAGTAGTCTCTTTCAGTCAGGAGGAGCAGTCCAAAGAACACAGggctgaaatggcaccctatgccctttaAAAGTGCACAACttctgaccagaaccctatgggagCGGGTCAAAAAGTAACACACTACTTAGGGAAAagtgtgccatttcagacacactcagtctgagaggagaggcagagcaaGAGGGGTGGATGGTGGTGGGAGGCAGAGCAAGAGGGGTGGATGGTAGTGGGAGGCAGAGCAAGAGGGGTGGATGGTGGTGGGAGGCAGAGCAAGAGGGGTGGATGGTGGTGGGAGGCAGAGCAAGAGGGTGGATGGTGGTGGGAGGCAGAGCAAGCTGGAGATGGAGTCTCCAGACGAGGATGATATCCTTGTCACCCTAACGAGGAGGCAGCTAGGTAGCTCCAGAAGTACACTCAGTGGCCTTTCTTTCAGCAGACAGAATGCTCACTCATAACCTTACACCACAAATAATACATCTAAACATCATCTAATTCAACAAAAGCAAAAAACTAAAAATGTTGTTTGTTCTTTCCTATTTACAAAGTGTTTTGACCGAATCTTTTAAGGTGTCGGAGGGGATAAAATCCCTCAAGGTTAAATTAAACGACCTAGTACAGTACCACATACATAAAACTGTTATCAGAACAGGGAGGGTGATAGTATTCCAGTCTTGCTGATGTCCATGAGAAGTTGTTGACTCCAGAGTCCTTTGATTCCAGGAAAGCTCCTCTTCTAGAGCTCAGTCAGGTGTGATGGGTTTAACATTGGAAATGGGAGCTTTCATGATCCAAGATGTATGTGAGTGGTTGACAATTAGTTGACATTAAAAAGGTATGTTGACTTGAAGATCCAAACTCTCCAAATTGAAGCAAATAAGTCATCTGCAATTTGAGGGGGAATTAAGGTGGCAGTAAAATAATTTTTGGGACAAATACAGCATTAAATATAACCAggacttctttaaaaaaaataacatcaaGCCACCTTcagaatataaaaaaataaaacaaatcaaccCATCCTGAGATCAAAAAATAAATACACCCCTAAGCGTGctcctttgtttgtgtgtgtgtttttttgtgtggcgCAGAACTCAGTCCAGACTGTCTTTTGGTGTGTCAGTATCCCTGTAGTCCATTGTAAACCTTCTGTACTGACGATTGTTTCAGAATCCC
>TU312500
AATTCTTTATTATAAACTTTTAATTGAAAAGTACATTTTCCCTCCTGTACTATAGCACATCCCATTATTCACAGTAGTCTCTTTCAGTCAGGAGGAGCAGTCCAAAGAACACAGggctgaaatggcaccctatgccctttaAAAGTGCACAACttctgaccagaaccctatgggagCGGGTCAAAAAGTAACACACTACTTAGGGAAAagtgtgccatttcagacacactcagtctgagaggagaggcagagcaaGAGGGGTGGATGGTGGTGGGAGGCAGAGCAAGAGGGGTGGATGGTAGTGGGAGGCAGAGCAAGAGGGGTGGATGGTGGTGGGAGGCAGAGCAAGAGGGTGGATGGTGGTGGGAGGCAGAGCAAGAGGGGTGGATGGTGGTGGGAGGCAGAGCAAGAGGGGTGGATGGTGGTGGGAGGCAGAGCAAGCTGGAGATGGAGTCTCCAGACGAGGATGATATCCTTGTCACCCTAACGAGGAGGCAGCTAGGTAGCTCCAGAAGTACACTCAGTGGCCTTTCTTTCAGCAGACAGAATGCTCACTCATAACCTTACACCACAAATAATACATCTAAACATCATCTAATTCAACAAAAGCAAAAAACTAAAAATGTTGTTTGTTCTTTCCTATTTACAAAGTGTTTTGACCGAATCTTTTAAGGTGTCGGAGGGGATAAAATCCCTCAAGGTTAAATTAAACGACCTAGTACAGTACCACATACATAAAACTGTTATCAGAACAGGGAGGGTGATAGTATTCCAGTCTTGCTGATGTCCATGAGAAGTTGTTGACTCCAGAGTCCTTTGATTCCAGGAAAGCTCCTCTTCTAGAGCTCAGTCAGGTGTGATGGGTTTAACATTGGAAATGGGAGCTTTCATGATCCAAGATGTATGTGAGTGGTTGACAATTAGTTGACATTAAAAAGGTATGTTGACTTGAAGATCCAAACTCTCCAAATTGAAGCAAATAAGTCATCTGCAATTTGAGGGGGAATTAAGGTGGCAGTAAAATAATTTTTGGGACAAATACAGCATTAAATATAACCAggacttctttaaaaaaaataacatcaaGCCACCTTcagaatataaaaaaataaaacaaatcaaccCATCCTGAGATCAAAAAATAAATACACCCCTAAGCGTGctcctttgtttgtgtgtgtgtttttttgtgtggcgCAGAACTCAGTCCAGACTGTCTTTTGGTGTGTCAGTATCCCTGTAGTCCATTGTAAACCTTCTGTACTGACGATTGTTTCAGAATCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU312498 False 1285 TUCP 0.43 2 55410143 55411487
TU312499 False 1254 lncRNA 0.43 3 55410143 55411487
TU312500 True 1285 TUCP 0.43 2 55410143 55411487

Neighbor

gene id symbol gene type direction distance location
LOC110520233 NA coding downstream 15140 55392189 ~ 55395003 (-)
crygs2 LOC106586348 coding downstream 18811 55389101 ~ 55391332 (-)
LOC110520232 LOC106586350 coding downstream 27982 55375915 ~ 55382161 (-)
armc8 armc8 coding downstream 38476 55357367 ~ 55371667 (-)
idh1 LOC106586335 coding downstream 263755 55131394 ~ 55146388 (-)
LOC110504309 plcl1 coding upstream 180877 55592364 ~ 55715785 (-)
LOC110520238 LOC106586370 coding upstream 368016 55779503 ~ 55821242 (-)
LOC110520241 LOC106586374 coding upstream 478895 55890382 ~ 55923883 (-)
LOC110520251 LOC106586357 coding upstream 572386 55983873 ~ 55985477 (-)
LOC110520250 LOC106586358 coding upstream 575616 55987103 ~ 55988048 (-)
G275249 NA non-coding downstream 4438 55405505 ~ 55405705 (-)
G275248 NA non-coding downstream 5429 55404476 ~ 55404714 (-)
G275244 NA non-coding downstream 9670 55399803 ~ 55400473 (-)
G275243 NA non-coding downstream 11897 55397890 ~ 55398246 (-)
G275252 NA non-coding upstream 1310 55412797 ~ 55413164 (-)
G275253 NA non-coding upstream 1732 55413219 ~ 55413719 (-)
G275255 NA non-coding upstream 3986 55415473 ~ 55444161 (-)
G275273 NA non-coding upstream 33621 55445108 ~ 55446072 (-)
G275274 NA non-coding upstream 35442 55446929 ~ 55447731 (-)
LOC110520227 plekhm3 other downstream 290931 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 727338 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 2159059 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 2701327 52693956 ~ 52708816 (-)
il1rl1 il1rl1 other downstream 3809913 51596933 ~ 51619476 (-)
si:dkey-91i10.3 LOC106586420 other upstream 1859295 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 1991497 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 2172899 57584386 ~ 57589183 (-)
G284018 NA other upstream 7303088 62714575 ~ 62715177 (-)
G286522 NA other upstream 9558062 64969549 ~ 64970755 (-)

Expression


Co-expression Network