G275291


Basic Information

Item Value
gene id G275291
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55476347 ~ 55477590 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU312542
ctctgtgaCTCTGTGTTTGTGGTTTAGGCTTTGCTTTGATCTGTCCGGCAGGGTAATTATAGAGCtatgggggagtgtgtgtgcgtgtgtgtatgtgtgcgtacacatgtatgtgtgtgcgggATGGGGGACAAGGGGGCTGGAGAGTAGGGGAGAAATTGTCCCATGCAGGCGTTGTGTGCTGGATGGGCGGatggagagacaaacagacagacaggctgaggaGGGGTCagtggtctgtgtgtgactgtctgtgagGCAGGCCTGTGTTGTACTGTAGAACCCCCTGTGGTTGTGGTTACACTGGACAGATCAGCTGGTTCTAATAAAGAAGAGTCAGTGCTCCCTGTGTGAAGGAGATGCCAGTTAACAGGCGACTATAGATTTCCTTTATtatcttctcttcctccctctttcagATGGCAGCCAGGGGTCAGGACAGGACTGGGAATGGCCATTGGCCGCTAATAGGCTGTCACTCAAGTGGCTTGGCCAATCCAGTACATAGTAATCATTGGCTAAGGTATAGGTTAGAGAAGGACAGCAGACAGTTAGTAAAGTGGTTGTGAGACGGTtcgggctcccaagtggtgcagtggtccaAGACACTGAGAATTGGTCTAAGACACTGAGAATTGGTCCATGCTAGTTGGGAGTTCCCAGAGGTCACAATTCTAACCTTTGATTTTCTTGTACTTCTTGTACCAGCGTCCAAATTCCTGGCATTTGGCAGTGGAGACATTGGCATAGTAGGAGCTGTTTACTATTGAGGAAATCAtactctgtagagagagagaaggagagagaaggggagagagagaaggagagagatgtttAATTGGCGATCAATTTGAATGCTCGCTCacttgcacacacaaacacacacatacacaaactatcattgaaaaatatatacatatatcacCAGGGGAAGCCACCCATTGAAATCTAGCCcatcaccatagcagcacacaTGGATGCAATTGACGCAGGGATCAACACCCACGCATTGAGCTCCATTTAAACACAGCATGCACAGATacataaataacacacacacataaagtcaTTTGGGGAATTCTAGGTTTCTACATTGTGTAATAAGCATGGTCTCCTATTGAGATGAATTACATTGAAAATTGTACACTGTCTCTTTAAGAGTGTCAGCGAGGTTCTGAGAGATGGCGTGTGAATCTGTCATTCATTCATTGCTATGATGATTGATCTTCTGAAGAAGCTATGTC

Function

NR:

description
DNA-binding protein SATB2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU312542 True 1244 lncRNA 0.46 1 55476347 55477590

Neighbor

gene id symbol gene type direction distance location
LOC110520233 NA coding downstream 81344 55392189 ~ 55395003 (-)
crygs2 LOC106586348 coding downstream 85015 55389101 ~ 55391332 (-)
LOC110520232 LOC106586350 coding downstream 94186 55375915 ~ 55382161 (-)
armc8 armc8 coding downstream 104680 55357367 ~ 55371667 (-)
idh1 LOC106586335 coding downstream 329959 55131394 ~ 55146388 (-)
LOC110504309 plcl1 coding upstream 114774 55592364 ~ 55715785 (-)
LOC110520238 LOC106586370 coding upstream 301913 55779503 ~ 55821242 (-)
LOC110520241 LOC106586374 coding upstream 412792 55890382 ~ 55923883 (-)
LOC110520251 LOC106586357 coding upstream 506283 55983873 ~ 55985477 (-)
LOC110520250 LOC106586358 coding upstream 509513 55987103 ~ 55988048 (-)
G275290 NA non-coding downstream 315 55475815 ~ 55476032 (-)
G275289 NA non-coding downstream 871 55474760 ~ 55475476 (-)
G275288 NA non-coding downstream 1998 55474040 ~ 55474349 (-)
G275287 NA non-coding downstream 2599 55473461 ~ 55473748 (-)
G275286 NA non-coding downstream 4189 55471699 ~ 55472158 (-)
G275292 NA non-coding upstream 167 55477757 ~ 55478048 (-)
G275294 satb2 non-coding upstream 2351 55479941 ~ 55480587 (-)
G275295 NA non-coding upstream 3405 55480995 ~ 55481267 (-)
G275296 NA non-coding upstream 4770 55482360 ~ 55483380 (-)
G275297 NA non-coding upstream 5964 55483554 ~ 55484217 (-)
G275250 NA other downstream 64860 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 357135 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 793542 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 2225263 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 2767531 52693956 ~ 52708816 (-)
si:dkey-91i10.3 LOC106586420 other upstream 1793192 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 1925394 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 2106796 57584386 ~ 57589183 (-)
G284018 NA other upstream 7236985 62714575 ~ 62715177 (-)
G286522 NA other upstream 9491959 64969549 ~ 64970755 (-)

Expression


Co-expression Network