G275294 (satb2)


Basic Information

Item Value
gene id G275294
gene name satb2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55479941 ~ 55480587 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU312545
cagaaccttagaccactgagatacAGAGCCTTCGACCACTGAGATGCAgaaccttagaccactgagatgcagaaccttagaccactgagatgcagaaCCACAGACACCAACCAAACCAACCgccagacagaaactaaaacataCAGACAATATAAACCATCAACAAGGCACAAAGACAGACAAGACACACCACAATcaaccagacacacacaggccCTGCTGTAGAGGAGCTTGGTGGAGAATGTCTATGGTAGTTTTGGAGGGCAGTGGGTGGTGGGCGGGGTACCTGTGAGAGGCGGGGGCCCCCGGGGCTGGAGCTAGGGGTAGGGGGCAGGCCGACAGGGGGGTTCATGCTGCGCTCACGCTCCTCCTGGTAAATacggtctctctccccctcagggAGGTTGAGGAAGTTCTGCATGGCTTTGAGGTTGACCAGCAGGGACTGAGAGGCAGAGCGAGGGTCCTCCTCCTTCCGCAGGATCTCCGACAGCAGGccctggtgcacacacacacacacatgcacacacgccgCAAACGTATACATTTAGAATGAGTGgttgcacacacacgcactgtaCGCACTCGCTCGTACAACCatgtgcatgcatgcacgcacaacacacacatgcacacttcaCCTGCCC

Function

symbol description
satb2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within epiboly involved in gastrulation with mouth forming second. Predicted to be located in nucleus. Is expressed in fin; head; nervous system; pharyngeal endoderm; and pronephric duct. Human ortholog(s) of this gene implicated in SATB2-associated syndrome. Orthologous to human SATB2 (SATB homeobox 2).

NR:

description
PREDICTED: DNA-binding protein SATB2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU312545 True 647 lncRNA 0.55 1 55479941 55480587

Neighbor

gene id symbol gene type direction distance location
LOC110520233 NA coding downstream 84938 55392189 ~ 55395003 (-)
crygs2 LOC106586348 coding downstream 88609 55389101 ~ 55391332 (-)
LOC110520232 LOC106586350 coding downstream 97780 55375915 ~ 55382161 (-)
armc8 armc8 coding downstream 108274 55357367 ~ 55371667 (-)
idh1 LOC106586335 coding downstream 333553 55131394 ~ 55146388 (-)
LOC110504309 plcl1 coding upstream 111777 55592364 ~ 55715785 (-)
LOC110520238 LOC106586370 coding upstream 298916 55779503 ~ 55821242 (-)
LOC110520241 LOC106586374 coding upstream 409795 55890382 ~ 55923883 (-)
LOC110520251 LOC106586357 coding upstream 503286 55983873 ~ 55985477 (-)
LOC110520250 LOC106586358 coding upstream 506516 55987103 ~ 55988048 (-)
G275292 NA non-coding downstream 1893 55477757 ~ 55478048 (-)
G275291 NA non-coding downstream 2351 55476347 ~ 55477590 (-)
G275290 NA non-coding downstream 3909 55475815 ~ 55476032 (-)
G275289 NA non-coding downstream 4465 55474760 ~ 55475476 (-)
G275288 NA non-coding downstream 5592 55474040 ~ 55474349 (-)
G275295 NA non-coding upstream 408 55480995 ~ 55481267 (-)
G275296 NA non-coding upstream 1773 55482360 ~ 55483380 (-)
G275297 NA non-coding upstream 2967 55483554 ~ 55484217 (-)
G275328 NA non-coding upstream 65515 55546102 ~ 55546396 (-)
G275336 NA non-coding upstream 76526 55557113 ~ 55557340 (-)
G275250 NA other downstream 68454 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 360729 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 797136 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 2228857 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 2771125 52693956 ~ 52708816 (-)
si:dkey-91i10.3 LOC106586420 other upstream 1790195 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 1922397 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 2103799 57584386 ~ 57589183 (-)
G284018 NA other upstream 7233988 62714575 ~ 62715177 (-)
G286522 NA other upstream 9488962 64969549 ~ 64970755 (-)

Expression


Co-expression Network