G276458



Basic Information


Item Value
gene id G276458
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55766309 ~ 55768336 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU313856
tgggaaatctttttgtatccaaatccggctttgaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctccgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttttggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcaca
>TU313857
tgggaaatctttttgtatccaaatccggctttgaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctccgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttttggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcaca

Function


NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU313856 False 384 lncRNA 0.40 2 55766309 55768336
TU313857 True 384 lncRNA 0.40 2 55766309 55768336

Neighbor


gene id symbol gene type direction distance location
LOC110504309 plcl1 coding downstream 50524 55592364 ~ 55715785 (-)
LOC110520233 NA coding downstream 371306 55392189 ~ 55395003 (-)
crygs2 LOC106586348 coding downstream 374977 55389101 ~ 55391332 (-)
LOC110520232 LOC106586350 coding downstream 384148 55375915 ~ 55382161 (-)
armc8 armc8 coding downstream 394642 55357367 ~ 55371667 (-)
LOC110520238 LOC106586370 coding upstream 11167 55779503 ~ 55821242 (-)
LOC110520241 LOC106586374 coding upstream 122046 55890382 ~ 55923883 (-)
LOC110520251 LOC106586357 coding upstream 215537 55983873 ~ 55985477 (-)
LOC110520250 LOC106586358 coding upstream 218767 55987103 ~ 55988048 (-)
LOC110505323 LOC106586359 coding upstream 229430 55997766 ~ 55999561 (-)
G276446 NA non-coding downstream 26553 55739422 ~ 55739756 (-)
G276445 NA non-coding downstream 27721 55738370 ~ 55738588 (-)
G276443 NA non-coding downstream 32475 55733500 ~ 55733834 (-)
G276401 NA non-coding downstream 43899 55722191 ~ 55722410 (-)
G276400 NA non-coding downstream 44443 55721593 ~ 55721866 (-)
G276421 NA non-coding upstream 112671 55881007 ~ 55881558 (-)
G276434 NA non-coding upstream 165500 55933836 ~ 55934130 (-)
G276420 NA non-coding upstream 168281 55936617 ~ 55937022 (-)
G276497 NA non-coding upstream 175083 55943419 ~ 55944159 (-)
G275250 NA other downstream 354822 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 647097 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 1083504 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 2515225 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 3057493 52693956 ~ 52708816 (-)
si:dkey-91i10.3 LOC106586420 other upstream 1502446 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 1634648 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 1816050 57584386 ~ 57589183 (-)
G284018 NA other upstream 6946239 62714575 ~ 62715177 (-)
G286522 NA other upstream 9201213 64969549 ~ 64970755 (-)

Expression



Co-expression Network