G275500


Basic Information

Item Value
gene id G275500
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55768059 ~ 55768413 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU312766
aattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctttgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcggagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagttcaaagccggattagtatcagaccactgcaaatctac

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU312766 True 281 lncRNA 0.43 2 55768059 55768413

Neighbor

gene id symbol gene type direction distance location
LOC110504295 LOC106586344 coding upstream 271471 55430193 ~ 55496588 (+)
LOC110520234 LOC106586346 coding upstream 356504 55405871 ~ 55411555 (+)
lcmt2 NA coding upstream 379337 55380671 ~ 55388722 (+)
LOC110520231 dbr1 coding upstream 393201 55371759 ~ 55375526 (+)
kcnh3 LOC103481844 coding upstream 412409 55157443 ~ 55355650 (+)
LOC110520236 LOC106586369 coding downstream 23946 55792359 ~ 55800630 (+)
LOC110520240 LOC106586372 coding downstream 65330 55833743 ~ 55849324 (+)
LOC118964367 NA coding downstream 73792 55842205 ~ 55842343 (+)
LOC118964369 NA coding downstream 75341 55843754 ~ 55843823 (+)
ankrd44 LOC106586375 coding downstream 87906 55856319 ~ 55890098 (+)
G275498 NA non-coding upstream 83 55766012 ~ 55767976 (+)
G275484 NA non-coding upstream 23800 55743985 ~ 55744259 (+)
G275480 NA non-coding upstream 30146 55737614 ~ 55737913 (+)
G275479 NA non-coding upstream 32197 55735656 ~ 55735862 (+)
G275468 NA non-coding upstream 42811 55724949 ~ 55725248 (+)
G275495 NA non-coding downstream 19990 55788403 ~ 55791421 (+)
G275536 NA non-coding downstream 102285 55870698 ~ 55903415 (+)
G275544 LOC106586374 non-coding downstream 132564 55900977 ~ 55904490 (+)
G275545 NA non-coding downstream 136409 55904822 ~ 55905288 (+)
G275548 LOC106586374 non-coding downstream 141070 55909483 ~ 55910082 (+)
G274592 NA other upstream 892944 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 1926442 53841264 ~ 53841617 (+)
G273004 LOC106586313 other upstream 2109376 53657461 ~ 53658683 (+)
G272965 NA other upstream 2115628 53648825 ~ 53652431 (+)
G275542 LOC106586374 other downstream 131781 55900194 ~ 55900743 (+)
G275553 LOC107595854 other downstream 146916 55915329 ~ 55916133 (+)
G277296 NA other downstream 1496154 57264567 ~ 57264892 (+)
G277973 NA other downstream 2021321 57789734 ~ 57790332 (+)
G280315 NA other downstream 4284303 60052716 ~ 60054417 (+)

Expression


Co-expression Network