G275495


Basic Information

Item Value
gene id G275495
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55788403 ~ 55791421 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU312761
CAGATTCAATAGTCCACTTTATTATTGTAACAAAACATGATCAGAATTATTTACAATTGAATAAcatattaaaaaaacaacaacacatgaaCGAGGCAACAATCTTCTCTAACAGGATGGATGGGGGTTACAGGGATGTTTTACAGTGAAACAGATTTTACTCTACATATTTGCCAAGGATGTCAGCATCACGGAACAGGAAACATGCCTTGTCTTCCAGGTCGACTTTAGTTCCTCCATACTCTGGCAGAAGGACCGTCTCTCCAACTTTGACACTCATGGGTGTCAGCTTCCCTTTCTGAATGagaacagtagaaaaaaaagattgCTGTATTGTATCTGGGCATTGTGAAATCTGATAAGCCAGTTAGACAACTCAGACAGACTGTAAGCCACAATTGTAGACAGACTCCAGTTAGTTACACAAATCATACATAAGCTACTGTTTAGCCAGAGTGTAAGATCGAAGTAAATTACCTGGTTTGTGGAGCCTGGTCCCACTGCGACCACTGTGGCCTGCAGAACCTTGCCCTGGGCCTTCTCTGGCAACATGATGCCCCCCTTTGACATAGTCTCCGCAGCCAGACGCTCCACTAGCACCCGGTCAAACATGGGAAGGAATTTCCTGAAAGCCTAAAAGATGTATGAGAACGGTTTTATGACGGAGACAACGTACAACAAAACATTGAAACAGATATAATCTACATAGCTCATCTGAGGTTGCGAAGTGTTGGACTCTTCTTCAGTGAGTACTTGACATTCCAATTGTTATACCCTCAAATTGCCACTAGCTAGAGTTTGATCCATTGTGTGAACTGAAAAAGGCTTAAGTAATACAAATGCACAAGGGGCCCCTTCAATAGCCAAAAGGAGATGTGTTGTAACCACCTGCCATCATCTGCTGAAAATAAGGATAATTTTGTGGGGGactgtttatttaactaggcaagtcagttaagaatttgttcttatttacaatgacggcctactccggccaacgctgccctatgggactcccaatcatggtcagatgtgatagagcctggattcgaaccaggtactatagtgacacctcttgcactgagatgcagtgccttaaactgcTGTGCCACTCTGGAGCCCCAGTGTACACCATTCAAAACCTTAAGGTGGATTCCAAGAGTTCCTGGCTTGGTAATTGTAGTTGCTCTTTTTGAAAGGCTATTTTTGTGAACGTCCAAAATGAATCACATCTGTGAAAGAGACTTTCATTTGGCTCCTTGACTTGTATTTAAGGTTAGGCCTACTACCATTTAAGCGATACTGAAAAAAAGGGCACTTTGGGATCTAAATTAACATATATTTTAGCTGAATGTATCCAAATGAGCTTGCACACGGAACACAAGAAACTAGTCACTAAAGGTATACATAAACCTACTACAGGTTAGTGGTACTCTATGCAAAATAGTTGGGAGTCAGTGAAGCTGACAATATGGTGGATGCCCCACAGGCTGTGGAGATTCCGTGTCGTTCAACAGTTTTAGGGAAACTGATATGCTGATCGTGAAGGTGGATTTTGTGGCTTTTATTGTATGTGATTAATTGTCCTGCCCAAATGAACAAGGAGTCCAAGGAACTGGCCATAATTGTATTTGCAGCTGAAAGATTATTGGGTGTCCAGGACTTCACGGCCGAAACATTGCAAGGAATACTGTGCAAAGATGCTCTTCCTTCTCAAGCCCCAGAGTTGACGAGTAGAGGGTTTGTTACTGCCCTTGACTACTAGAAGTGTCCAGGCAATTTGCAAGTAGAGCCTGCCAAAGGCAACAAAGACACCGTTAGTATTCACTATTGAAAAGATGTAAAGCAGCATTtcccaaaggggtgcacatttggggttttgccctaacactacacagctaattaaaatgatcaaagctagatgattatttgaatcagctgtgtagtgctagggcaaaaaccaaaacgtacaCCCTTTGGGGttccgaggaccgagtttgggaaaccctggcttAAAGCAAGCAATTGTTAGATATCTGATGTAGCACAATCTTTAAGCTAAaactacaaaaaaataaaaaaggtatgGATTCTCTCTGTGGCCTGCATAATGCAAGGAGTTTAGGAGTCAACATTTTGAAGATTTGCAACACCAGCTGCCTGTCTGGTAACAGATGCATCTTTGACCTTGAATGAAGGTTGTCGATGAGACAGGGGACAGAGGGTTTGTGGTTCTAGGCTGTTGACTCCtgggcagggctctccaaccctgacCCACAGATAAACTTCTATACTAATCATGGCTTTGATGTTAGACTAAATTCCAGAACAGGTCAGGGAGTGTGCTCACACACCCCCACATGGGCCCAAAAATctatcaaactttatttgtgtCACATTCTTCCTAAAcaggtgtagacaaacagtgaaaCCTGGGCAAGGCTTTGTGGGGTTTAGTAGGCTCAAGGACCCAGACGTCAAGAGATAACATTGAACAAAAACAAATAATTCGAGGTCTATTCTTCAGTGACCGGGGTTTCAGATCCCATTCTAACATCTTTAGAATACTGTGCAATATTCCCAAGCAGAATTGTGCAATCTAGTGCGGCAAAATGTATGGACAAATAAAATGCTGTGACGCTGTTGAACATGGGGTCACGGCTTCTGCGTTACCCGGAACTGGTTGATAGCCGGTAATTCCCTTTTTCGTTGTGCAAGGGCAGACAGTGAAATCAACTAGAACATACaataggtcaaataaaaataccACACTTGTGCACATATCAATTTAGATAGCAACAGCAAATGCTTCTACTCATCACTTTATTCGTTCTTCATAGTTCACTAGTACCCATCAACTACAGTGCCAATTGTGAAACTCGTG

Function

NR:

description
10 kDa heat shock protein, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU312761 True 2884 lncRNA 0.42 2 55788403 55791421

Neighbor

gene id symbol gene type direction distance location
rftn2 rftn2 coding upstream 9089 55741697 ~ 55779314 (+)
LOC110504295 LOC106586344 coding upstream 291815 55430193 ~ 55496588 (+)
LOC110520234 LOC106586346 coding upstream 376848 55405871 ~ 55411555 (+)
lcmt2 NA coding upstream 399681 55380671 ~ 55388722 (+)
LOC110520231 dbr1 coding upstream 413545 55371759 ~ 55375526 (+)
LOC110520236 LOC106586369 coding downstream 938 55792359 ~ 55800630 (+)
LOC110520240 LOC106586372 coding downstream 42322 55833743 ~ 55849324 (+)
LOC118964367 NA coding downstream 50784 55842205 ~ 55842343 (+)
LOC118964369 NA coding downstream 52333 55843754 ~ 55843823 (+)
ankrd44 LOC106586375 coding downstream 64898 55856319 ~ 55890098 (+)
G275500 NA non-coding upstream 19990 55768059 ~ 55768413 (+)
G275498 NA non-coding upstream 20427 55766012 ~ 55767976 (+)
G275484 NA non-coding upstream 44144 55743985 ~ 55744259 (+)
G275480 NA non-coding upstream 50490 55737614 ~ 55737913 (+)
G275479 NA non-coding upstream 52541 55735656 ~ 55735862 (+)
G275536 NA non-coding downstream 79277 55870698 ~ 55903415 (+)
G275544 LOC106586374 non-coding downstream 109556 55900977 ~ 55904490 (+)
G275545 NA non-coding downstream 113401 55904822 ~ 55905288 (+)
G275548 LOC106586374 non-coding downstream 118062 55909483 ~ 55910082 (+)
G275549 NA non-coding downstream 118751 55910172 ~ 55910394 (+)
G274592 NA other upstream 913288 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 1946786 53841264 ~ 53841617 (+)
G273004 LOC106586313 other upstream 2129720 53657461 ~ 53658683 (+)
G272965 NA other upstream 2135972 53648825 ~ 53652431 (+)
G275542 LOC106586374 other downstream 108773 55900194 ~ 55900743 (+)
G275553 LOC107595854 other downstream 123908 55915329 ~ 55916133 (+)
G277296 NA other downstream 1473146 57264567 ~ 57264892 (+)
G277973 NA other downstream 1998313 57789734 ~ 57790332 (+)
G280315 NA other downstream 4261295 60052716 ~ 60054417 (+)

Expression


Co-expression Network