G275553 (LOC107595854)


Basic Information

Item Value
gene id G275553
gene name LOC107595854
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55915329 ~ 55916133 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU312833
TCTCAAAGGtaatatgattgattgattggttaagAGGAAGTAGAGCGCCAATAAAACCATGCACGTGGACCAAGCAGGGATAAGGAACCCACCCAGTATACAGGGGAAGAAAAGGAGGGcagacagaggagacaggagaaggatGGAgtgggcagggagggagaggagaggacatggaggGGAGAGGATATAGGGGATGAAGAGTGCTGAatgtttctctcttctctgtctcttcaacTCTGCATTTGAAGGAAAAAACAAAGATATGAGAGTAGGGATACACAGAAAATCATGCAGGATATACACAGACAGAAATAAATACACTGTGGACAAGAGAGGTGAAGAGAAGACAACAAAAGACTAGAGGTCAATGCGAAGGAGAAGTGCATGCATTGTTCGTAGGACAGGAAGGGGACAAAATTACTAGAGTAAGGATGCAAAAGACTGGAGAGTGCATGCATGGTTCCTTCCACAGACTTAAACCTATGATTTATCTCTATGGTTCCTCCTCTCGGTCTGTGTTCTTAGGGttggggccatttgggatgcacccttaTTTTACCTCTGCCAGGCCAGGTCCTCCTCCAGGAAGATGTTGCGGCTGGCCTTCCGTCCACCGACCGGGGTGCGAGGCTCACTGGGCTCCAGGACGCAGGTGGAGCAGGGTGAGGAGTCAGACAGAGCAGACAGGTCCTCCCCTATGGAGCCAGAGTCTGCAGAGTGGGAGTAGCTCAGAGCAATCTTACGGCAGTAGGTGCAGGCCCGCAGgtctcctagacagacagacagacaatggcgggaggga
>TU312838
GAGGATATAGGGGATGAAGAGTGCTGAatgtttctctcttctctgtctcttcaacTCTGCATTTGAAGGAAAAAACAAAGATATGAGAGTAGGGATACACAGAAAATCATGCAGGATATACACAGACAGAAATAAATACACTGTGGACAAGAGAGGTGAAGAGAAGACAACAAAAGACTAGAGGTCAATGCGAAGGAGAAGTGCATGCATTGTTCGTAGGACAGGAAGGGGACAAAATTACTAGAGTAAGGATGCAAAAGACTGGAGAGTGCATGCATGGTTCCTTCCACAGACTTAAACCTATGATTTATCTCTATGGTTCCTCCTCTCGGTCTGTGTTCTTAGGGttggggccatttgggatgcacccttaTTTTACCTCTGCCAGGCCAGGTCCTCCTCCAGGAAGATGTTGCGGCTGGCCTTCCGTCCACCGACCGGGGTGCGAGGCTCACTGGGCTCCAGGACGCAGGTGGAGCAGGGTGAGGAGTCAGACAGAGCAGACAGGTCCTCCCCTATGGAGCCAGAGTCTGCAGAGTGGGAGTAGCTCAGAGCAATCTTACGGCAGTAGGTGCAGGCCCGCAGgtctcctagacagacagacagacaatggcgggaggga
>TU312836
CAAAATTACTAGAGTAAGGATGCAAAAGACTGGAGAGTGCATGCATGGTTCCTTCCACAGACTTAAACCTATGATTTATCTCTATGGTTCCTCCTCTCGGTCTGTGTTCTTAGGGttggggccatttgggatgcacccttaTTTTACCTCTGCCAGGCCAGGTCCTCCTCCAGGAAGATGTTGCGGCTGGCCTTCCGTCCACCGACCGGGGTGCGAGGCTCACTGGGCTCCAGGACGCAGGTGGAGCAGGGTGAGGAGTCAGACAGAGCAGACAGGTCCTCCCCTATGGAGCCAGAGTCTGCAGAGTGGGAGTAGCTCAGAGCAATCTTACGGCAGTAGGTGCAGGCCCGCAGgtctcctagacagacagacagacaatggcgggaggga
>TU312834
CTGCCAGGCCAGGTCCTCCTCCAGGAAGATGTTGCGGCTGGCCTTCCGTCCACCGACCGGGGTGCGAGGCTCACTGGGCTCCAGGACGCAGGTGGAGCAGGGTGAGGAGTCAGACAGAGCAGACAGGTCCTCCCCTATGGAGCCAGAGTCTGCAGAGTGGGAGTAGCTCAGAGCAATCTTACGGCAGTAGGTGCAGGCCCGCAGgtctcctagacagacagacagacaatggcgggaggga

Function

NR:

description
PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase-like isoform X11

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU312833 False 805 TUCP 0.50 1 55915329 55916133
TU312838 False 622 TUCP 0.50 1 55915512 55916133
TU312836 False 390 TUCP 0.56 1 55915744 55916133
TU312834 True 241 lncRNA 0.63 1 55915893 55916133

Neighbor

gene id symbol gene type direction distance location
ankrd44 LOC106586375 coding upstream 25795 55856319 ~ 55890098 (+)
LOC110520240 LOC106586372 coding upstream 66569 55833743 ~ 55849324 (+)
LOC118964369 NA coding upstream 72070 55843754 ~ 55843823 (+)
LOC118964367 NA coding upstream 73550 55842205 ~ 55842343 (+)
LOC110520236 LOC106586369 coding upstream 115263 55792359 ~ 55800630 (+)
LOC118962850 NA coding downstream 17430 55933563 ~ 55935062 (+)
si:dkey-57a22.11 LOC106586378 coding downstream 26174 55942307 ~ 55948120 (+)
LOC110520246 LOC106586379 coding downstream 32460 55948593 ~ 55953872 (+)
LOC110504321 LOC106586380 coding downstream 41198 55957331 ~ 55961495 (+)
LOC110505308 LOC106586381 coding downstream 46662 55962795 ~ 55964012 (+)
G275554 NA non-coding upstream 1001 55914292 ~ 55914892 (+)
G275552 NA non-coding upstream 2871 55912690 ~ 55913022 (+)
G275551 NA non-coding upstream 3246 55912416 ~ 55912647 (+)
G275550 NA non-coding upstream 3651 55911813 ~ 55912242 (+)
G275549 NA non-coding upstream 5499 55910172 ~ 55910394 (+)
G275555 NA non-coding downstream 1182 55917315 ~ 55917548 (+)
G275556 NA non-coding downstream 1928 55918061 ~ 55918584 (+)
G275559 NA non-coding downstream 3700 55919833 ~ 55920370 (+)
G275598 NA non-coding downstream 92306 56008439 ~ 56011288 (+)
G275542 LOC106586374 other upstream 15150 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 540367 55371759 ~ 55375526 (+)
G274592 NA other upstream 1040778 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 2074276 53841264 ~ 53841617 (+)
G273004 LOC106586313 other upstream 2257210 53657461 ~ 53658683 (+)
G277296 NA other downstream 1348434 57264567 ~ 57264892 (+)
G277973 NA other downstream 1873601 57789734 ~ 57790332 (+)
G280315 NA other downstream 4136583 60052716 ~ 60054417 (+)
G281141 NA other downstream 4371255 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 4824106 60740239 ~ 60757350 (+)

Expression


Co-expression Network