G275673


Basic Information

Item Value
gene id G275673
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56292849 ~ 56295217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU312987
catttgggacacagtctttATCTCTGTGGACCACAGGGTCTGTCTgaccctgcaacacctctaacCAGTATGTATGGGAAACATTTCAATGACCACATCACCTCTACAATCCTAACATAGCATCATTGGTCGACGGTCATTGGACACATTTTTTGTGTGTAGTCCTTACGGAGCCTGGATCGAGGCAACTCAGTAAAAAGTGTGCATGTTTACAGTTTACTTTTCATTAATGGGAAAAGGATGATTTTAAATTGAAACCGTTTTAATTATGTGTAAATAGATACTTGATTATATATTTTATCTCACCACCGCATGCCTGCTGAAACAAAGGAGACAGAAAGAAATGTCTGTCTGCTTGAGGAGAGACCACGCTGATTGTTGCAACCCTCTCCCTCAAGCTAGGACCTGTCCTGCTGTCGGGTGATATTAGCTATTCAACCCCCTCAACCAATCCTTTGCTTAAAAACCCATGATCTTGTGTATTTACTTTGTCTTTCCCTGTTGGTAGCTAGCATAGCATGTTGATACTTCTGTGCAAGAAAAGGACAGTGATGGCTTGTCTTGGTCGAATAGAGAGACTTTCCAGGAGAAATGTACACCTTTGCCAAGCGGCCATTTTGGGTTTCATCATCAGGAGATGGAAGAGAGACACCGACACGACATCACAACCACAGAACTTAATCCTATCAGACGCTATATCAACCTTCAATGTTTGTGTCATTCACCAGTTACCACTCATCTCCAATTCCGGTCATCAGAAATGACCAATAGCCTtaaccaacaaacaaacaaaaggagCGGCTTTCTCTTGCTTTCTCTGCCAGGACACAACAACAGCACAATTGCAATGCAAGCCACCCACTTAGAaggagtaaaaaaatatatagaaacaAGTCAAAGAATGATGGTGACTATCTCCTCTTACTCTGTGTTGCAATAACTCACTGCCATCACCAAAGGGCTGGTGTGAAAACATCTGTTTTCTTGTTGACAGAGTGTCCCTTGGCGGGTCCTGGAAAAGGCTGCCGTTTGGGACGACGCCAATAAGTTGTCCACCGTGATGCAGCAGGGATTTCTATGTACTGCACCACATCTACTGTTATAAACATAGCCATAGTGTGTGGCCGTGGCCTCTGTCTTTGTTGATGTACATGATGTGATGTGACTTGTTGAAACCACGCTGCCTCTGAGGTAACCTAATGTAGGAGGTGTGAgagatcccctacatactggtcttgacaagaagaagaaaaaactgtcagaggaggttctcttctgcactgttcaaccaatccagtaaatgtggaggaggagttaagatggagtgtcaCCTTGCTAATGTCCAAAAGCGGAAATCGAGTCACAGGTTGTCTTTTAATTTCCACTGAAAACCGGAACATCCGGTTGTTGGGAACTCGGCAGAGGCTACCTCTGAGGTGACCTAGAGGAGGGAGTTTGAGTGGTGGTTAAAGGGGGTGTTTGTGGTGGTGTTTGTGGTATATCAAATAAACCAATTATGATGATAGTGTACACAGTCTATTACAAGTAGGATTGTGTAGTTAATATCTAATATCACTAATatctacattcttccactgaattGAGACAACCGGGCACAAAAAAGGCTCCCATATCCACGCAAGCATACCATTTAGAATATGGCCAATACGTTGCTGCATTTTAAGTAGTATTTCATCTGGGATTATTGGAATGGAGCCAAAGACAGTCTTCGTCACCATCCTCCCCTTGTGTAACTATTATCCCCTTGTCTCCACTGTCGCTCCCGCTTCAAACCTTGTTTTATTTCCACCTTCAGAGACTCACATAGGCAGTGAGGTTTATCGTACTGTCACTGTCGTTGGTGCAATCCTATTCTTAGGCATGGGCAGATTAACTAACAGTATTGAGTGACACTAGTGGCCAGGACACATGCAGTAGATCCATGCATACAGTCCATTTCATTCCTGAGTGTGATGTTCTACATGTATGCATAAACCCATAGGCCTGTTGTGtttaccatagaaatataattaatagaaAGGGCTTAGAACATTTGACAATAGCAATTTGACTGCTAAATTCATGGGTacactcaaaatggctgccaATCCTCCCATTATTGCATCATTGACTTGAAAGGGGAGGCCCGTTCTACTTATTCTAGTTCTGTGGTGTTTACCCCCTCAGGGTCAGTGTGGTATGTAGCTATCCATACGCCTGTAGCACCCAATGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU312987 True 2234 lncRNA 0.43 2 56292849 56295217

Neighbor

gene id symbol gene type direction distance location
LOC110504343 LOC106586387 coding upstream 3663 56139812 ~ 56289186 (+)
LOC110505342 LOC106586366 coding upstream 201874 56087619 ~ 56090975 (+)
LOC110504333 LOC106586365 coding upstream 208187 56083841 ~ 56084662 (+)
LOC110505333 LOC106586363 coding upstream 213553 56077184 ~ 56079296 (+)
LOC110505326 LOC106586362 coding upstream 229876 56062335 ~ 56062973 (+)
etv5a LOC106586388 coding downstream 8209 56303426 ~ 56320718 (+)
LOC118936648 rbm44 coding downstream 29785 56325002 ~ 56329352 (+)
LOC110520256 rbm44 coding downstream 34094 56329311 ~ 56336070 (+)
itgb5 LOC106586391 coding downstream 42811 56338028 ~ 56434926 (+)
LOC110505355 NA coding downstream 144649 56439866 ~ 56440949 (+)
G275722 NA non-coding upstream 72993 56219643 ~ 56219856 (+)
G275720 NA non-coding upstream 74473 56217653 ~ 56218376 (+)
G275719 NA non-coding upstream 75306 56217318 ~ 56217543 (+)
G275716 NA non-coding upstream 79460 56213155 ~ 56213389 (+)
G275776 NA non-coding downstream 13090 56308307 ~ 56309663 (+)
G275846 NA non-coding downstream 128796 56424013 ~ 56424916 (+)
G275860 NA non-coding downstream 152379 56447596 ~ 56447865 (+)
G275863 NA non-coding downstream 156660 56451877 ~ 56452654 (+)
G275870 NA non-coding downstream 181151 56476368 ~ 56477171 (+)
G275553 LOC107595854 other upstream 376716 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 392106 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 917323 55371759 ~ 55375526 (+)
G274592 NA other upstream 1417734 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 2451232 53841264 ~ 53841617 (+)
G277296 NA other downstream 969350 57264567 ~ 57264892 (+)
G277973 NA other downstream 1494517 57789734 ~ 57790332 (+)
G280315 NA other downstream 3757499 60052716 ~ 60054417 (+)
G281141 NA other downstream 3992171 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 4445022 60740239 ~ 60757350 (+)

Expression


Co-expression Network