G276829 (tsg6)


Basic Information

Item Value
gene id G276829
gene name tsg6
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56453003 ~ 56461796 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU314273
gtatttatttgattgTAGAGTAACATGTTGACAAAATGGTCATACGAAACACAACTAGAGGACAGTAGCCTACGTTATGACAGTATGTTGTGTGAAAAGAGAGTCTTATGAGTCTTGTGAGTCTATATGAGTATCAATACATTTAGTACAATGCACCTTTCTGACATCTTGGATAAGACTGTAACAACCCTGAATCAACCATACAATGTAAACTCAACAAATTAAAACATAATGCAAAGGCACATTCAATCAAAAGCTGGATCCTCACCTCCCGGCAAAGCCAGAGACGTCGTCATAGCTGTCATAGATCTCCAGGTAGTCTGCTAGACAGGACGTGTCCTCCTCCACGTCGAACTCCAGGAAATGCAGGCGTATCCTATGTCCATAGCGTACACGGATGTGCCAGTAGCAGATCTGCTCATCTTGGTACTCCTCTGGGTAACCAGGTGACTGGATGATCTTCTGCTGGTCTGTCAGAGTTCCTCCACACTCCTTCGAGTTGGGGTTGTAGCAGTAGACGTCCCATCTTTCACTCTTGTTCAGCCTGTACCCGTAGTCGATGACACCAACCTTCCCAAAACCACAGTTGGCACCAGCTTTGACGATAGGGTAGCCTACACGACCTTTGTCATACCACCCAGCCGCACACACGTGAAAACCTATTTGACGAGCAGCCTCCAGTTGATCGTAAGTGGCCAGATTTCCTCCTTCGTATTTGCACACCGTCTTGGCCTCCTTATAAGTCAGCTGGTATCTCCCTTTACGCGATTCCCTGTGGTAGACTCCAGCAGCTTGCTCCAACCATATGGAGTTATGAAATATTCCATTTCTGAAGCCCCACGCTTGCACTTCCTTCAAGAAGAAGCAGATGGCCCAGATGACAGTGAAGATGCGCATCCTCCTCCTGAACAGAACAGAGCTGTGCGCAACGGGTTGATATCCTCTCGCTAGCAGCTACCGCTCGCGCTGTGCTCGCTGCTCATCTGGCGACTGGCCTTTTAAATAGACTGCCCCAGCGGCGCGCTCTGCCAAGGCTAAGCGTCAAGGTAATGAGAATACGTTGCCCAACACTGAGAAGTGACCATACATAGACTTATGGGAATTTACCAGTGGGGGACCATTGACCTGCGTTAGATTTAAAAGAGTCTGTCAAGCATTAAGACATGATAGGTTATACAGATGTTTAATGTGTCACTGACTTTATGCGTTAAGCCATAAAGACATCCATATTCATCAGGAAACAATGTGTTCATGCAAAAGAACACACTTATTTAATCATTTTTTTAGGCCTATAGGGGACACAATGGCTAAAATATCCCCATGGATGTTTCCGCTACCTTATCACCCTCTTTGGTCAAGTGCCACTTAACTAAAAAATATACCTGGTTGTCAGTGGCAACTGATTAATAGAGGGTAAGGTTATCTGATCTTCTGCTTTATTTTTACCAAGGCTTAGACCATAAATATTCACAGATTTAGTGCTGGAAGTATATTGTTGAAGGATGTTCTACTGTTTGAAAATAATATTTCCATGTATCAGGTTGCCTAGATAGGTTGATATCTAGTATCTCAAAGGTATAGGAGGCACAGAGGCCTATTTGGGGTGTGGGACTTTCTTTCACGCTAACCAGGATAATTACTGAAGATCTGATGTCAATAGATAAAATGgtaacatacactgctcaaaaaaataaaggcaacacttaaacaacacaatgtaactccaagtcaatcacacttctgtgaaatcaaactgtccacttaggaagcaacactgattgacaataaatttcagacaacaggtggaaattataggcaattagcaagacacccccaataaagaagtggttctgcaggtgataaccacagaccacttctcagttcctatgcttcctggctgatgttttggtcacttttgaaagCTGGCGGtgatttcactctagtggtagcatgagacggagtctacaacccacacaagtggctcaggtagtgcagctcatccagg

Function

symbol description
tsg6 tumor necrosis factor-inducible gene 6 protein

NR:

description
tumor necrosis factor-inducible gene 6 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU314273 True 2005 lncRNA 0.44 4 56453003 56461796

Neighbor

gene id symbol gene type direction distance location
LOC110520254 LOC106586385 coding downstream 403858 56047811 ~ 56049145 (-)
LOC110520253 LOC106586384 coding downstream 411305 56040760 ~ 56041698 (-)
LOC118936311 LOC106586361 coding downstream 434631 56017260 ~ 56018372 (-)
LOC110520252 LOC106586360 coding downstream 448218 56003832 ~ 56004785 (-)
LOC110505323 LOC106586359 coding downstream 453442 55997766 ~ 55999561 (-)
LOC110520260 NA coding upstream 33355 56495151 ~ 56578650 (-)
arl5a arl5a coding upstream 127761 56589557 ~ 56600573 (-)
LOC110520263 LOC106586393 coding upstream 139008 56600804 ~ 56650953 (-)
LOC110520265 LOC106586394 coding upstream 190573 56652369 ~ 56667591 (-)
LOC110520269 LOC106586397 coding upstream 370602 56832398 ~ 56844653 (-)
G276826 NA non-coding downstream 4623 56448177 ~ 56448380 (-)
G276722 NA non-coding downstream 91563 56272351 ~ 56361440 (-)
G276689 NA non-coding downstream 235550 56217238 ~ 56217453 (-)
G276675 LOC106586387 non-coding downstream 252589 56200173 ~ 56200414 (-)
G276664 NA non-coding downstream 266641 56186152 ~ 56186362 (-)
G276835 NA non-coding upstream 7116 56468912 ~ 56469711 (-)
G276840 NA non-coding upstream 18463 56480259 ~ 56480482 (-)
G276843 LOC106586392 non-coding upstream 21633 56483429 ~ 56483715 (-)
G276844 LOC106586392 non-coding upstream 22579 56484375 ~ 56485672 (-)
G276907 NA non-coding upstream 209698 56671494 ~ 56672592 (-)
G275250 NA other downstream 1041516 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 1333791 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 1770198 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 3201919 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 3744187 52693956 ~ 52708816 (-)
si:dkey-91i10.3 LOC106586420 other upstream 808986 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 941188 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 1122590 57584386 ~ 57589183 (-)
G284018 NA other upstream 6252779 62714575 ~ 62715177 (-)
G286522 NA other upstream 8507753 64969549 ~ 64970755 (-)

Expression


Co-expression Network