XLOC_022168 (si:ch211-220i18.4)


Basic Information

Item Value
gene id XLOC_022168
gene name si:ch211-220i18.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 9908940 ~ 9925568 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043777
ATGGACTCTAAGCTGAAATCAATCAGACATTATGAACATCTTGAACCTGATCTTGCAGAGGAATTTGAAGATCCAAGAGATTACTGCTATGGTGGATATCACCCAGTCCAGGTTGGAGACATCTTTAATAAGAGATACAAGGTTTTATCAAAGCTGGGTTGGGGTTATTTCTCTACAGTATGGCTGTGCGTTGACCTCAGGTCCGGCAGGCATGTGGCAGTAAAAGTGTTGAAGAGCGGAGCTGGATTCACTCAGGCTGGCCAAGATGAACTCACATTACTGCGATGTGCCAGTGGTCCCACAGCCCGTAACCCACTTAAAGGACGTATAGTACAGTTACTGGATGAGTTTAAGTTAGCTGGTGTAAACGGGATCCATATTTGTTTGGTGTTGGAGCTGCTGGGGCCAGACCTGCGTTGTTGGCAGATGTGTTTCGGTAATCCAGGTCTGTCTCTCTCCTGTGTCAAACACGTCATCACTCAGGTACTTGAGGGTCTGGAGTATCTGCACAGCCACTGTAAGATCATTCACACAGACATCAAGCCTGAGAACATACTGCTGTGTTTCACACCTCATCCACCAGGAGGAGATATACACACATATTCCTCTTCAGCCATTAGAAACACAGTACTCAAGGCTCCTGGAGAATCGGGAAAACTTGGAACTTGGGGAAACTTGGAAGATATCACAGTGAAGATTGCAGATCTTGGCAGCTCATGTTGGGTGTACAAACACTTCTGTCAAGAGATCCAGACCAGACAGTATCGCTCTCTGGAGGTCCTGCTGGGCTCTGAATACGGTCCTGCAGCTGACATCTGGAGTGTGGCCTGCTTGGCATTTGAGCTTGCAACGGGCGATTCCTTATTTGAGCCCAAAGCAGGACCTAATTTCTCATTAGAGGAAGACCACCTGGCTCACATCATTGAGCTCCTGGGAAAGATCCCAGTCTCTGTGGCTCAGTGTGGAAAATATTACTACGAGTATTTCAACCGCAAGGGTGACCTGCGGCGAATCGCTGTTCTTCGTCCATGGGGACTGTATGAAGTGCTGGTGGAGAAATATCACTTTCTCCTCAGAGAGGCATCACTTTTCTCTGATTTCCTGTTGCAGATGTTGAACTACCTGCCAGAGCGGAGAGCCACAGCAGCTCAGTGTCTTAAACATCCCTGGCTGAAACTGTGA
>TCONS_00043778
TTCAGCACTACATGCAGAAACCACAGCAACTCAAGCTCCAAAACCAGTCTTTTTGTTGATGTCGACGTAATGTCGCAGCCAACTGTTTCCTCAGAATATCCCTCAACCCTGAGAAGGAGAGAGGGAGGGGGGTGTAGAGCAGACCCCATCATAAAGCCAGGAGGAGCATCTACTGCAGAGTTAGAAAGAAACCCTGAAAACCAACACAATCTGCTCCTAAAATCTCATGTAGTAATGGACTCTAAGCTGAAATCAATCAGACATTATGAACATCTTGAACCTGATCTTGCAGAGGAATTTGAAGATCCAAGAGATTACTGCTATGGTGGATATCACCCAGTCCAGGTTGGAGACATCTTTAATAAGAGATACAAGGTTTTATCAAAGCTGGGTTGGGGTTATTTCTCTACAGTATGGCTGTGCGTTGACCTCAGGTCCGGCAGGCATGTGGCAGTAAAAGTGTTGAAGAGCGGAGCTGGATTCACTCAGGCTGGCCAAGATGAACTCACATTACTGCGATGTGCCAGTGGTCCCACAGCCCGTAACCCACTTAAAGGACGTATAGTACAGTTACTGGATGAGTTTAAGTTAGCTGGTGTAAACGGGATCCATATTTGTTTGGTGTTGGAGCTGCTGGGGCCAGACCTGCGTTGTTGGCAGATGTGTTTCGGTAATCCAGGTCTGTCTCTCTCCTGTGTCAAACACGTCATCACTCAGGTACTTGAGGGTCTGGAGTATCTGCACAGCCACTGTAAGATCATTCACACAGACATCAAGCCTGAGAACATACTGCTGTGTTTCACACCTCATCCACCAGGAGGAGATATACACACATATTCCTCTTCAGCCATTAGAAACACAGTACTCAAGGCTCCTGGAGAATCGGGAAAACTTGGAACTTGGGGAAACTTGGAAGATATCACAGTGAAGATTGCAGATCTTGGCAGCTCATGTTGGGTGAGATCCAGACCAGACAGTATCGCTCTCTGGAGGTCCTGCTGGGCTCTGAATACGGTCCTGCAGCTGACATCTGGAGTGTGGCCTGCTTGGGCATTTGAGCTTGCAACGGGCGATTCCTTATTTGAGCCCAAAGCAGGACCTAATTTCTCATTAGAGGAAGACCACCTGGCTCACATCATTGAGCTCCTGGGAAAGATCCCAGTCTCTGTGGCTCAGTGTGGAAAATATTACTACGAGTATTTCAACCGCAAGGGTGACCTGCGGCGAATCGCTGTTCTTCGTCCATGGGGACTGTATGAAGTGCTGGTGGAGAAATATCACTTTCTCCTCAGAGAGGCATCACTTTTCTCTGATTTCCTGTTGCAGATGTTGAACTACCTGCCAGAGCGGAGAGCCACAGCAGCTCAGTGTCTTAAACATCCCTGGCTG

Function

symbol description
si:ch211-220i18.4 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction; regulation of mRNA processing; and spliceosomal complex assembly. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0050684 regulation of mRNA processing biological_process
GO:0006468 protein phosphorylation biological_process
GO:0010468 regulation of gene expression biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-151 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction; regulation of mRNA processing; and spliceosomal complex assembly. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus.

Ensembl:

ensembl_id ENSDARG00000030262

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043777 False 1182 mRNA 0.48 11 9908940 9919959
TCONS_00043778 True 1389 mRNA 0.48 13 9908949 9925568

Neighbor

gene id symbol gene type direction distance location
XLOC_022166 prkcbp1l coding downstream 44774 9809540 ~ 9864166 (-)
XLOC_022167 BX324190.1 coding downstream 55930 9852896 ~ 9853010 (-)
XLOC_022165 mapre1b coding downstream 101362 9794730 ~ 9807578 (-)
XLOC_022164 lama5 coding downstream 140240 9567334 ~ 9768700 (-)
XLOC_022163 soga1 coding downstream 416674 9400425 ~ 9492266 (-)
XLOC_022169 plxnb1a coding upstream 12668 9938236 ~ 10137322 (-)
XLOC_022170 krt5 coding upstream 247628 10173196 ~ 10177458 (-)
XLOC_022171 krt8 coding upstream 324058 10249626 ~ 10254288 (-)
XLOC_022172 NA coding upstream 366600 10292168 ~ 10394444 (-)
XLOC_022173 NA coding upstream 699789 10625357 ~ 10628072 (-)
XLOC_022162 dre-mir-2193 non-coding downstream 554009 9354822 ~ 9354931 (-)
XLOC_022161 CU137717.2 non-coding downstream 592246 9316578 ~ 9316694 (-)
XLOC_022160 NA non-coding downstream 1072602 8835967 ~ 8836338 (-)
XLOC_022159 NA non-coding downstream 1108185 8799037 ~ 8800755 (-)
XLOC_022174 NA non-coding upstream 702584 10628152 ~ 10631424 (-)
XLOC_022179 NA non-coding upstream 1069221 10994789 ~ 10997256 (-)
XLOC_022181 NA non-coding upstream 1417036 11342604 ~ 11345773 (-)

Expression


Co-expression Network