G276844 (LOC106586392)


Basic Information

Item Value
gene id G276844
gene name LOC106586392
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56484375 ~ 56485672 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU314294
TTTTGGTTCTCTTGACCTCTTTCTGGTGCTCAGTGAGAACTCTCTCCTTGGTCTCAGGGGGGATGAACACAAAGTCTATCGAGGCCTGCTCCTCCAGTTCCTGTCCTTTATCTCCTCAGCCCTGGGCAGTAGAGAATCCCTCTTCACCCCAGAAGTGACCTGTACTCCACTCAGTTTGGTCTCCAGCTGAGAGCTCTCACTCTGCATCCACAAAACATAATCCAGGGATTATTACACCATTCATATGAAACCTGCTCCGATTTGACTTATTCAACAGGGAAAACACTCACCGAGGACTGTCCACTGAGTTCATCTGGAACTTCAACAGACTGAAATCCAGGTAGAATGATAGGAGTGTTCTGCTTCACCTGGCTCAACACCGGCCTGGAAAAAACAAACATTAGCAAACATGAAAACCTTTTAGGGTCAGTTTAGGGCCAGTTTTCAGGACCCAGATTAAATACATTGCTGGACTTTAAAAGCAGTTTTATTGGCGATCCTCCACTGAATATGCTATTGGTCCAGGAAATCACCCCATAAATATAATATGGCTCATCTTAACATCCAAACAGATTCTTACTTGAGTTCCTCTGGATAGACGAGGACCAGAGTGTTGGCGAAGGTTGCATTCCAGAACTGTGTAGCTAAGGAGCGGACCTGCTTGCGCCGATGGAGGAACAGGACACAGAGCAAGGGGGACAGCAGGGAGAGCAGCTCATCATCATAGGCCAGGGCTGAACGGATCTGCAGGCACCCCAAGACATCACTCAGGAGCTTCTCCAGCTGCAGGGAAAGAACACACTTATAGTGAGACTAGCACCCAGACACAGATGATCGGTTAAAGATATGAAGCATGCAAAGAAAGTATCAATTACTTAGaaactgagcaaaaatataaacgcaacatgtaaagttttggtcccGTGGTTCATGAGCTGAACTttcaaaaatcccagaaatgctAAATACGCAGCAAGAATA

Function

NR:

description
telomere-associated protein RIF1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU314294 True 981 lncRNA 0.46 2 56484375 56485672

Neighbor

gene id symbol gene type direction distance location
LOC110520254 LOC106586385 coding downstream 435230 56047811 ~ 56049145 (-)
LOC110520253 LOC106586384 coding downstream 442677 56040760 ~ 56041698 (-)
LOC118936311 LOC106586361 coding downstream 466003 56017260 ~ 56018372 (-)
LOC110520252 LOC106586360 coding downstream 479590 56003832 ~ 56004785 (-)
LOC110505323 LOC106586359 coding downstream 484814 55997766 ~ 55999561 (-)
LOC110520260 NA coding upstream 9479 56495151 ~ 56578650 (-)
arl5a arl5a coding upstream 103885 56589557 ~ 56600573 (-)
LOC110520263 LOC106586393 coding upstream 115132 56600804 ~ 56650953 (-)
LOC110520265 LOC106586394 coding upstream 166697 56652369 ~ 56667591 (-)
LOC110520269 LOC106586397 coding upstream 346726 56832398 ~ 56844653 (-)
G276843 LOC106586392 non-coding downstream 660 56483429 ~ 56483715 (-)
G276840 NA non-coding downstream 3893 56480259 ~ 56480482 (-)
G276835 NA non-coding downstream 14664 56468912 ~ 56469711 (-)
G276829 tsg6 non-coding downstream 22579 56453003 ~ 56461796 (-)
G276826 NA non-coding downstream 35995 56448177 ~ 56448380 (-)
G276907 NA non-coding upstream 185822 56671494 ~ 56672592 (-)
G276969 NA non-coding upstream 332973 56818645 ~ 56819892 (-)
LOC110520270 LOC106586417 non-coding upstream 381538 56867209 ~ 56917413 (-)
G277110 NA non-coding upstream 482364 56968036 ~ 57046855 (-)
G277168 NA non-coding upstream 568313 57053985 ~ 57054282 (-)
G275250 NA other downstream 1072888 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 1365163 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 1801570 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 3233291 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 3775559 52693956 ~ 52708816 (-)
si:dkey-91i10.3 LOC106586420 other upstream 785110 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 917312 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 1098714 57584386 ~ 57589183 (-)
G284018 NA other upstream 6228903 62714575 ~ 62715177 (-)
G286522 NA other upstream 8483877 64969549 ~ 64970755 (-)

Expression


Co-expression Network