G275875 (LOC100194727)


Basic Information

Item Value
gene id G275875
gene name LOC100194727
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56500212 ~ 56509613 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU313218
AGCActacagtgggtgtgtgtgtgttttattgggTACCAGTGACAGTCTCCTGTTCGTGCTCCACGACACGTCTCTTCTCCATCTCGACCACGCGTCTCTGGATGCCACGGTAGTTGATGTCGCTGAACTCCTGGGTGTTCTTCTTCACGCGGTCCATGACAGGGTCAGAGGTAGTGGGAGTGAAGCTGCCCTTAGTCCTTTCAAAGTCCTGGTGGTATCTCACCTGGTGGACACAGCACTGGGATGGTTTCACATCGGTAGGGAAGGAGTAATCAACTTGGTATggcatgtgttatttcattttaATAAAGGACTAAGTGGAAAGCCTAGTTCAATTTAAGTGGTATGGTTTAACATTGGTACGAATTATGAAAGTGATACATTTTTGTCTGGCATCAGTTATTACATATAAATGACTTTACAAGCTTAATAACATTATAAGAACCAGAGACTAACTCCAGAAATGTTGCGTTGAGTCTCCTTGACCCGTCTCATCTCAGGTGTGTCCAACACAAAGGCAGCCTTGCCCTGGACCTGCTTACGGAAGCTGTCAGAGTACAACACCTGTGGGATGGcagagaggacagcagaggaacAACGTGAGCACCAGAGTTAACAGATAGGCCCACTCTGAGAAGGGCTTATTATTGGGACCTCCCGACAGATGATATTAGCAGGGAGATTCAAACATTCAGAGTGGGTGTGGATTAAGAGGGTGTGTCCCAATTCATAAGGGGGTTAGGAGTGTGTTTTCCAATCCTTAATGGGGGTGATGGGAGTGTGAGAAAGTCAGGGGAACAGGAGGAAGTTGACTAGTTTCAACAACAAGGGAGAGGGTTAGCGATGATAATACAGACAACACATCACAGCTGGTGGGTGGTATtaaaagagatgaggagagtagAGGCTGACTACTGTAGATCTGATTAATAAGGTTAACTAAAGAAGGAGGAGTTAGAGAGGGTTAACGTGGGTTCTAAAGGGGCACACAGGTCATGGAGGATGGCTGGTGTACCGAGCTAATTTGTTCTTGGTTCCGtttcgctctctccatctctggagTGAACACTTGGGGTGTTCCTTTAGCAGAACTGTCCTTATACATCACCTACAGAACAGAAACACAATGCCCCCCAGGGGACCGTAAGACACACTGCAACAACACAGACAGCAAtcacacaacccaacacacacacactaaaacatcTGCAGCCTCCACAGCATGGCAAGGATGTTAGTTGCCACACTAAAACAGGAGATATAATAACACAAAACTAACACTGCTGTGGAGAGGAGATAAAAACTTTGTGGGAAAAAAGGTTATGGAAAGGGAAAAATGGAAACGCAAAAACACTCAGAACATGAGGGAGCCACATCGTAGAGGGTGTTTTTGGCTGAGGTTGGAATTAAGGGAGAGTCAACGGTGATTTACTGATGTTGgaaggtggatggatggatagataggaGGGAGAAGGACGGATGTGTTATATTTTTAGATTTAGATTTTTGATTGTTGATGACAGGGGCTGTAGCTCAGGGAGCTCCAGCCTGAACCGTTGGGCATCGCTGATGCAGGAAGATAAAAGGAGTATATGAGGGTTGATGatgaggggtcaggggtcagcagATAAAGAAGACGGTTTAAGGAGGTGAGGGATGGTCAGGTGAGGGAGGGTCATGCTCAAATGTCAACTAAACCCAGTGAGAAACACAGAAACACGTGTTGGTGGGTTCAATGGTTTCCTCTAGTACCGAGCTGATGTTCTTCTGCATCTCACGGACCCTCTTCACCTCTGGTAGGTCTGAGACGGCTGTGCCCTGCCCCAACGAGTCCTTGTACTTTATCTACACATCAGATCAGCAGCACGGGTCCCATGCAGAGTAGAGGAGATGTCATAatggacatacacacagagagcaaCCGTaagccagagacagacagcagctacaaATGGCATTGAACTCATAATAGCACAAAGACAAGAGCAACTACAGAGGAATAAAGCTAGaatgaacacacacaacacagcaaCAACTTCAGCAACAGCATTTTGGGCCTCACCTCTTAGATGGAAACATGTAATCACAGAGAGTGGTTCCTCTaccaatatattaatatattgttCAGACATAGTTACATGTTACCAGAGAACTTGACATTGTAAAATCATCATCTACTTGCTTCATTTTGGGGGAAAATGTATGTTTAACTGGAACAAGCTACATTAGTATCATTACTACATGATATGTTTGATGAGATGGTGATAAAGGCTTGTTTAATAGGGTATCTTTCACAGATAACAGTTTTGAGGTGGGGTGAGATTGGAAAGGGTTGGACAGGGGAATTAAAGAGGGGTTTGAGTTGTACAGGGGCTTGAATAACAGGAGCAGGACAGACAGGAGTATATGGATGGTAGATGAAAGGTAGGTAGGTGGATCACACTATAATACTGTGTACCGTGCTAATGTGTTGCTGATTGCGtttaactctctccatctctggggTGTCTGACAGAGCTGTCCCTCTTCCCAAATCCTCTTTGTACTGAATCTTTAAACAGTAACACCAGGACAACCAGTCAGAAAGAGGGTTGATTGCCCATTCAAATAATAACAAAGGATATTGTAAACTTATGATGGCCGCCATCAAACGCATGCAAAGGTTTGGGTTACAGTTAAACTACTGTTCTGAAATCTCACAGCACTTCACTTCAGAAACTGAGTAGAAATAAAATcaaaagatttttaaaaagtatgATGAAATTAATAGAAACAAAAAATGAAGAAAACTCTAAGAGCAATTTGTCTGGTAGGACAAAAACATTGAAAAACAAGAATTTAAGGGGATGATTCTATTTGGGCCTttagtttggaggaaaaaggatgTTACGTTATTTAGTATTCAGGAGGAAGCGCTAGGCTTCATCTTAGCACACAGAAGTCAACAGTCAGGAGAATAACCACTGATAGTTTAGGGGGCATTATTTGAGGTCAGTTAGGGGTCTTATGACAGAGAAGGTATGAGTTTTTTTGGGAGTTTGTTGGTTGGGAAATTAAGTGGGGCTAGATAGAAACTCTAATACCGAGCTGATGTTCTTCTGCATCTCACGAACCCTCTTCACCTCAGGTAGGTCTGAGACGGCTGTTCCCTGACCCAACGAGTCCTTGTACTTTATCTACCATAGGGGTTCCATgaggaacacagagacaaagCAAGACAGATATAaagcacacacatactgtacacacacagcagCAAAGACGAAGGCCTCACTGAAAACAGTGACAATGCAGCTGGCGTAAAGCACAAGAACGCTCACATGTAGGTAAAACAGTCATGATTGTTAACAGCAGTTAAGTTTACAGCATATACAGTTTATAACACTATACACAATGTAGCTGAATAGGAAACTTCTGAGCGAATGAAAGGTCGCTATTTGGTTTAGTTTATTACAGATCTTAGATGTAATGAATTATTGTTTTGTTTGATGACTTCTGTTGAGTCTGCTGGGACAATGAACTCTGAGATTAGTATATACTCTGCAGAATGGTGTTGAAAAGGTGGACATTAAAAATGGTTGCCATTATGTAAAGATTAAACCATTATATGGTCTAGTTTTTAAAATTATGGgaactgtgttggtggtggtgtgggggtcaGCATGGAGCCTATGGCATGGAAGTGTAGCCTGAGTGAAgatgggtggagaggagaggagaagaaaagcaggttcacactatAGTGTACCGTGCTAATGTTTGTCTGATTGCGTTTAACTCTGTCCATCTCTGGGGTGTCTGACAGAGCTGTTCCTCCTCCCAAATCCTCTTTGTACTGAATCTTTAAACAGTAAGAGGAGGCAAAAAGTAGTGAGCGACGATTAGCCTGACACAAAACATTTCTAGATGGCACATGACTGAAGCATTACACCGGTTGGCTAACAGTAAAATAATTACCATATAATGGCACTTCAGCTTTGCACAAACCAGAGGTTTAACATCTAAAAATTGTATTAACCTAAAGGTTAAAGCTGCTAATTATAGGAAAAATACAGCAAccctgggcacagacgtcaattcaacatctattccatgttggttcaacatcatttcgttgaaatgaagtggaaacaacattgattcaaccagtgtgtgcccaatgAGAAGTTTGTCTAGAATTAATCTCGCACTATCTATCATAGTTAATATCTATATTATCTACATCAAAAAGGGCTGCATATCAGGGAATGTTAACTTTCAGTTCAAAAGAGAGTCAAAAAataagcaaaaaaataaaaatatcaagAAAGGGGAGgtattaaaaaaaaagttaaaatatGTTATTAGAAAAGGTCAAACATATTTTTAAAAGATACTCATGTAGCAGTAGGTATACCGAGCTGAAATTCTTTGTATTCTCTTTAACACGTAGCATTTCAGGGGTGTCCTTTATTGATGACACTTTGCCCTTAACGTTTTTAAGGTGGTCTGTCTGGTACTGAAGCTACAGGGAAAAGAGCACAAGTGCAGTTAAAATGTCTCGcaataataacaacaaaaaaatcaagaaaagatagaaaaagaaaacaaaaagagaaaaaaGCAACAACCATGATAAAACAATGGCGCTCTAATGAATATGTGAAACATTACAAACGCACTGCCTTTTTTTTACTGCCGATAGTAAAATGCATAAACCGCATGGTCTACTCTACACTGGGAAAAAAATATCTCTTTACTTTTGTTTATGGAATATGCCATTCTCTAATTATATAGATTCAACTATGTAATTAGCTGCTGTTCTTCCCAAAAACAATAAAAAGCCTTGAGCCTGGCTTTTCTGAATCGACAATTACATAATAAACATAATGTACAGTATGCTGCTGGTTTTCATTAGTTCAGACAGCGCAACACAACAGATGTTCATAAAGAAACAATGAACATATACTGTAAATGTATATAAAGTATTGTAGGTAATACTTTGAAGACAAGACACCgaagacacacagagagccacCATGCTGCCACTGACTGGCATGGGTGATGATGAACCTGAGATCTGGAACCTGGGCATTTGGTTCCAAACGGAGGATTCTAAAACAGAAGGTTCTAAAATGGTTCTACTTACAGTGCTGAAGTTTTTCTGGTTCTCACGGACTCTCATCATCTCAGGGGTGTCCAGGACGGGCACATAGTGAGACATGGTATTCTTGGCCTCCTCCCTGTACTTTTTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU313218 True 5235 lncRNA 0.41 2 56500212 56509613

Neighbor

gene id symbol gene type direction distance location
rif1 LOC106586392 coding upstream 5368 56463388 ~ 56494844 (+)
tnfaip6 tsg6 coding upstream 37416 56454004 ~ 56462796 (+)
LOC110505355 NA coding upstream 59263 56439866 ~ 56440949 (+)
itgb5 LOC106586391 coding upstream 65286 56338028 ~ 56434926 (+)
LOC110520256 rbm44 coding upstream 164142 56329311 ~ 56336070 (+)
LOC110520266 phs1 coding downstream 158520 56668133 ~ 56680567 (+)
adcy5 LOC106586396 coding downstream 173451 56683064 ~ 56818530 (+)
sema5ba LOC106586418 coding downstream 407839 56917452 ~ 57105517 (+)
LOC110520274 NA coding downstream 712034 57220562 ~ 57230455 (+)
LOC110520279 LOC106586423 coding downstream 825424 57335037 ~ 57405623 (+)
G275871 NA non-coding upstream 21794 56477927 ~ 56478418 (+)
G275870 NA non-coding upstream 23041 56476368 ~ 56477171 (+)
G275863 NA non-coding upstream 47558 56451877 ~ 56452654 (+)
G275860 NA non-coding upstream 52347 56447596 ~ 56447865 (+)
G275846 NA non-coding upstream 75296 56424013 ~ 56424916 (+)
G275881 NA non-coding downstream 11728 56521341 ~ 56523190 (+)
G275894 neb non-coding downstream 37184 56546797 ~ 56551723 (+)
G275903 NA non-coding downstream 41137 56550750 ~ 56552245 (+)
G275933 LOC106586393 non-coding downstream 91200 56600813 ~ 56603925 (+)
G275937 NA non-coding downstream 99160 56608773 ~ 56612630 (+)
G275553 LOC107595854 other upstream 584079 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 599469 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 1124686 55371759 ~ 55375526 (+)
G274592 NA other upstream 1625097 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 2658595 53841264 ~ 53841617 (+)
G277296 NA other downstream 754954 57264567 ~ 57264892 (+)
G277973 NA other downstream 1280121 57789734 ~ 57790332 (+)
G280315 NA other downstream 3543103 60052716 ~ 60054417 (+)
G281141 NA other downstream 3777775 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 4230626 60740239 ~ 60757350 (+)

Expression


Co-expression Network