G275933 (LOC106586393)


Basic Information

Item Value
gene id G275933
gene name LOC106586393
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56600813 ~ 56603925 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU313305
ACAGAGCTCGGAATTTATTTAACAAAATAAGTAATTTTTTTATGCAGCTAGAGTTGGTTCTCATTATACATCAATGTTCCATAAAACATATTTCTCTTTCTTCTTGATGAATTAAAGTGTTGTATTAGTCATGCAGTTATGCATTTCCCTTTTGAATGTCATCTTTcacaaaaataacaataacacaataacataatcATTGAACTGCAATGAAGCCGCTAAGTAGCCGAGGAAGGAAAAGCATCAGCATGCAGCACTGTACACATTTGCATagtaaattatattttttctctAGATTAGTTTGTCTTCTTTGTTTTTCTCTTTACGAGCATGCCTTTATAGAATACAGCATAAACAGAAATCAAGCTGTCTTGGCAATAGAAGAAGgcattcaaagatgaagaagaaaTAATAATGATGCACACCCAGAATTGGTGCACAACACACAACTCATAGTATATAGAGAGACATTATCTGACATAAACTTCTAGCCACCACCTCCCCAGTCTATACCCTTCACACTCTCTACACAACTTAACTTTTATAATTGGCTAACCATATAGACCTTAAAAACTCCTAACTAAAATGCTACAGTTTGAGGATATGTATATGATTAGGAGAGTAACCACTCCATTGCTACAGTGCTAAAAAAGAACGGAAGTATGAATAGAGAAAGAAGTTTAACACAAGGCCTGGGTTAAGCAATAAGGCTGTAATTTGTGTTATGATACGCAAATTCTTGGGATAGTAAAATTGTCCTTTAAAAAAACTACATAATTTTGTTTTCACGGCCAGTACATGGAAGACTTTTAAATGGGGCATTAATATAGAATAGCCGATGGTTGGAAAGCAAATAATACTGACCAAGTGTTTGATGTCAGAATCACAAACCTTTCTGACAAAATAACATTAacttcacagcagactgaagcctTCTCTTCCTCTTATGTGTTGACTAATTTAATTGTTGAAATGTGAGTACCATAAATAACAGTCACTTACTCAACTACAGTGTCCTACTGGTTTTTCAATAGCAACAACACATACATAACAGGATCATTATTCCATGGCATACTGTATATTGACAAAAAGACATGATGGCATTGATAATTCTAAACCAATGAAACTTTGCTGAATGGACAGCAGGTATTTCTTACTGGCCAAACAGGACTTTCTTTGAATATATTACACTTGAATTAAGAAGACTGTTAAAAAGAGAAGAAAATATGATGCAAATGAAATCACTATCAGAGGCTGCTTGTACAGAACATGGGATGTGGTAAACCAATCAGATGATCAATATTCCCCTGATTGGAAGTATAACCATCTTCAATGAGCCTATCCTCTGAAACCCATTTGAACAATTGAAACTAAGCACACATGGGCATATTGCCCTTCTCAACATTGGATGCCTAGTCTTGAGATCTACTAACTTGAATTTGGCTATTTCCTCTTGGATTCCACATACTAAACTGATAGGCAAAGTCTTCACACTAGTGTGTTAAGGTACTATATAAAGAAGGGATGCACCCTTTCCTGAAAGAGCACAATATATGAAACTTGCTCAGCAAATTCTACTTAGAAAAGTGTGATTTTCTGTCCTGATGCGGCATGTCGCAAATGGCACTAAGTATCATTGAGGAGAAGAAGGGAATAGAAGTCCAGGAAACTAGAAGATTCCAATTCAGAAACCCCCTAAATAATCACTCAACATTTTGCAAAACAGAAACTTTGTCTGCTCTGAGAagcaggttataggctacaggacTGGAAACACTAACATCCAAGACAATTTCAAACAACTTAGTGATATTAATTAAAGATACAGTGCACTGACTCTGCTGCTATTGGCTCCTGGAAACGTGCAAAGAGGTTCTCTGCTGATCGAGTGATGCATGGCGCTGCCTGGCACTGGTTCAAGGCAGGTGATGATGGGTCATCATGACCACCACGACAGCTATCCCTGCTAACACTGAGACAACAGGGAGTGAGGACCACATGGTCACCCCTTTCACCCAGCCATGCCAAGTCTCTGCCATGTTAGAAAAGAAGAAGACAAGCCCAGTGTTGGGCCTTCCCTTAAAAAAAACATGGTGAAAATCTGCTCCTCATCCTATTTTTAGTTTTGAAAAAATGGAGGCGTCGAGATTTGATTTTCAGTTGGTCAATGCTCACGTTTCCAGTGTGAACCAGTGCCAGAGGTAAAGCGAGTTACTAACACTTTATAAAAAGGTTGTTACAGTACAATTAAATGAAAGAGCTGTCTTGTGGCTCTGTCATACTCAAATGTGAAGGGAAGAGAGGCCTATGTGATATAAGGGTCTTCAGCTCAAAGCCTGTGCCTGGAGTCATGGCTATAGCCTCCGGGGGAGCCATTGCGGTTACGGTGGGGCTTGTACGTGTCCTGGTAGGGGTCATGATAGTCCTCCTCCACCAGGGGGTAGTGGACCTGGTCCCGGCTGTGCTGCGAGCCGGAGGATAGGCGGTTACGGCTCTTCCTCTGCCGCTCATTGTGGTAGTTCTCGTCTGAGGGCATTAGGCTGTGTCTCTCGATGGGTGAGTGGTCTGCTGCTGTGTGATTGCTGTTCCTGTTTGTATTtctttggccctgTGGTTCACCAGCCCGGTTATGGCTGTGGGGTacggagagagagcggtagatcCCAGGTTGCGGCCCAGCAGAGGGTTGAGAGGggtgctcagggaggtgtgtgtggccCTCCAGTAGGCTTCCAGGTACTCTGCCAGGTGCTCACATGCATCCTCCAGCTGATTCTCATCCAGAATGATGTCAAACatttc

Function

NR:

description
voltage-dependent L-type calcium channel subunit beta-4-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU313305 True 2802 lncRNA 0.41 2 56600813 56603925

Neighbor

gene id symbol gene type direction distance location
rif1 LOC106586392 coding upstream 105969 56463388 ~ 56494844 (+)
tnfaip6 tsg6 coding upstream 138017 56454004 ~ 56462796 (+)
LOC110505355 NA coding upstream 159864 56439866 ~ 56440949 (+)
itgb5 LOC106586391 coding upstream 165887 56338028 ~ 56434926 (+)
LOC110520256 rbm44 coding upstream 264743 56329311 ~ 56336070 (+)
LOC110520266 phs1 coding downstream 64208 56668133 ~ 56680567 (+)
adcy5 LOC106586396 coding downstream 79139 56683064 ~ 56818530 (+)
sema5ba LOC106586418 coding downstream 313527 56917452 ~ 57105517 (+)
LOC110520274 NA coding downstream 617722 57220562 ~ 57230455 (+)
LOC110520279 LOC106586423 coding downstream 731112 57335037 ~ 57405623 (+)
G275903 NA non-coding upstream 48568 56550750 ~ 56552245 (+)
G275894 neb non-coding upstream 49090 56546797 ~ 56551723 (+)
G275881 NA non-coding upstream 77623 56521341 ~ 56523190 (+)
G275875 LOC100194727 non-coding upstream 91200 56500212 ~ 56509613 (+)
G275871 NA non-coding upstream 122395 56477927 ~ 56478418 (+)
G275937 NA non-coding downstream 4848 56608773 ~ 56612630 (+)
G275953 NA non-coding downstream 24389 56628314 ~ 56628627 (+)
G276151 NA non-coding downstream 342228 56946153 ~ 57027283 (+)
G276200 NA non-coding downstream 410410 57014335 ~ 57108879 (+)
G275553 LOC107595854 other upstream 684680 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 700070 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 1225287 55371759 ~ 55375526 (+)
G274592 NA other upstream 1725698 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 2759196 53841264 ~ 53841617 (+)
G277296 NA other downstream 660642 57264567 ~ 57264892 (+)
G277973 NA other downstream 1185809 57789734 ~ 57790332 (+)
G280315 NA other downstream 3448791 60052716 ~ 60054417 (+)
G281141 NA other downstream 3683463 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 4136314 60740239 ~ 60757350 (+)

Expression


Co-expression Network