G276240


Basic Information

Item Value
gene id G276240
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57140946 ~ 57145348 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU313632
gCTGCTTAAAATCTCACATACATTTGATTTTGTTTTCACAGGACAATAACATCTATACCCCCCAAACACATGATAAGCAGTGTAATAGGAACGAGTTTCACTACTGTACACATACGGACTACCTCATCATCACAGAGTGGGTGGAGAGGACAGAAATCACAGGGAATTAAGGCAACATGTCACAAGGTTCTGAAGGTAAAGAGCATGAAGACAGTGTTCTATCACTGGGTCGATCCACGAAGAGTGTCTTTggcatccctttgatattttaagtagaaattgtgcatcAATATTGGATTTCAAAAGCCTGTtttattaaatgaagtgccctttaaccTAGACCACATGTAGAATTGAATCCATCTGAATGAATAAATAAAGTGCCAAAaatcagcattttgacatgtccctctgtctaccttctgtgacttctaggaagatgttttttaacccacttaatcccCACAAGTtctcaccatcattgtaaagccctagttattttgctgctttgacaaagtcatttctgaagatgattatttattttgtgtgattagtgattcatttacatcTGTCCCTCACTCtaaaggtcaaccctgttacgtgaactgaactctcattgTAATATGGTGAAACTCTtccttttaaatatttttttcaaaagaAACCATAAACATCTAATAGCCAAATCATAGCGTAAAAGCAGGTGAGATGGTTCTACTCTGAGCGGATCAAGCATAACATGTCAACCCGGTTACCCAtacatagacaggctagaaatatattttttattttacctattGAGCTgggaaaatgtgttttaatgaactGAACATGTGCtctgacagaatgttaaaatgaggtgaaattcCTTTTTCTTTTAACAGTTGTCAAAAGGCACcaaattggtggaacgaccccaAGGGGTAAAGAGAACTTACTGTACAAGGTGAGAGGAAAAGACAAGCGCCATTCAGAACATACAGTtaaagtgggaagtttacatacacttaggttggagtcattaaaacttgtttttcaaccacgccccaaatttcttgttaaacaaactatagttttggcatgtcggttaggacatctaatttgtgcgtgacaagtcatttttccaacaattgtttacagacagattcaaAATACAGACCTTTTCAaaatatcacaattccagtgggtcagaagtttacatacactaagttgactgtgcatttaaacagcttggaaaattccagaaaatgatgtcatggctttagaagcttctggtaggctaattgacataatttgagttaattggaggtgtacctgtggatgtatttcaaggcataccttcaaactcagtgcctctttgctagacatcatgggaaaatcaaatgaaatcagtcaagacctcagaaaataaattgtagacctccacaagtctggttcatccttgggagcaatttccaaatgcctgaaggtaccatgttcatctgcacaaacaatagtacgcaagtataaacaccatgggaccacgcagccatcataccgatCAGGATgtagaagcgttctgtctcctagagatgaacgtactttggtgcgaaaagtgcaaatcaatcccagaacaacagcaaaggcccttgtgaagatgctggttgaaacaggtacaaaagtatctatatccacagtaaaacaagtcctatatcgacataacctgaaaggctgctcagcaaggacgaagcaactgctccaaaaccgccataaaaaaagccagattacggtttcaactgcacatggggacaaagggagtactttttggagaaatgtcctctggtctgacgaaacaaaaatataattgtttggccacaatgaccatcattatgtttggaggaaaaagggggaagcttgcaagccgaagaacaccatcccaactgtgaagcacgggggtggcagcatcatgttgtgagggtaatttgctgcaggagggactggtgtacttcacaaaatagatggcatcatgagaagggaaattaggtggatatattgaagcaacatctcaagacatgagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcaaacttccaaagttgtggcaaaatgtcttaaggactacaaagtcaaggtattggagtggccatcacaaacctcTGACCAATCCCatagataatttgtgggcagaactgaaaaagtgtgttcgagcaaggaggcctgcaaacctgactcagttacaccagctttgtcaggaggaatgggccaaaattcacccaatttattgtgggaagcttgtggaaggctacccaaaacatttgaccctagttaaacaatttaaagggaatgctaccaaatactaattgagtgtatgtaaacttctgacccactgggaatgtgatggaagaaataaaagctggaataaatcattctctctactattattctgacattcttaaaataaagtgatgatcctaactgacctaagacagggaattcttactaggattaaatgttaggaattgtggaaaaatgagtttaaatgtatttggctaaggtgtaaacctccgacttcaactgtacatactataTACCGTATCACCCAGGAAAAACATTTTCTGTGGTTTGTCTGTGGCACAGCCGAGTAATGGGAGTTGGTGAGTGGTTTTGGCATGTTGAAAAAATAAGTTCCCAGTTAAAGTCCCTTGTAGATTAGTGCCTTTCAGGACCAGTCACTCCACAATCTGGACAAAGGTGGTTCTTTCCCGTTCCCCTCTTTTTCATGTTGAACATCAGTTCAACATGTGTTATTTCTCCGTGGGAAAGTAAGCATCCCCTCCAAGTCCAATCCTGACCGTCCAGACAAGGAGGTGCTTACCGAACCACTACCTGCCTCTTGTTGTCAGTGTCCTCAGCACAGTGACTACTGCTGGTGAACGCTGTGCGTTAGATGTAGAGCAGCTTCGTGGTGACTTAATAGTTTGTGGTTTCCACAGAATCAGCCACAGTCTCAGCTGTGCAACAGCGGTATTCACATATTTCATGACAGTCTTTGTATTTGTCTCTGTATCTACTGTGTTAGTGTTCTGATCCCTCTGTAATAATAATGGACATTTCTACTGAGAAATATTTCATGttaaaaccatttaaaaaaaacatgcctTTCTCACTGAAACAAGTTTAGTTCAAAATTCAAAAATCTCCTATATAGTATAACAAACTgtaaacagcaacaacaaaaaacatttgaccATTTTGAAATGTTCGTCTGCATATTAACCAACTCCAAACCAAAATATCTGACTCCCGTTGTCAGCTGAAAGGTCAGAATGACACGGGGAAACTACTACGTCCAACGTCCATATTCTGAACTGCTCATTAAAACGGACTGTGTGGTAACATCATGAGACCCGCGCAGCAGAGCctcgacacacacagagaggagagttttAAAGCAGTGACTTTGCATGCAGAGCGAGGCGGTCTCTGCGGCTCATCCAATCATATCCCAAGACACTGGCGTGCACCAGGGTGGTGTCCAATCATAGTCGACGACACTGGCAGGAACCTGCACGGCCTGCAATCAATTCAATCCCATAGGGAGAAAAAATGTCTTGCATAAGTcttgagagagggggatatagtaAAAAAAGGAGACCATATGTCACTATTAAAAGACATGTAATATCACAGGTAATTCAACAGAACAGCTTAGTTTGACAGTTTTAGCCCCCTGCAATTCATAACCAGCAGTTATGAGTGACACTAAAATGCTATACGGTCCCTTGTTAGCACAGATTGGTGGGGCTTGCTGATTGGCTGCTAGAGCTACTCAGCCAACAGGCCACAGGGAAACCACCTGCCACAGAGTGCATCTTTAAACAAACAACAGTCCCTCATCATACCATGACCAGGTCCCACTGTAGTTTACATTATAAAAAAGACAAGACAATGCTGCATCAGAGGACCAACTGGCCAAACCGACACTTATAAAGACTTAACATGAATTACTAATTGTCTGAGGCCCTTGGCTGGCGCTTCTCATTGGCTACAAGGAAATCACAATGAATCACCGACCACCGTCATATTACAAGTTTACACCTACAGCTATACTTAAAACGTAAAAGAGCGCAAGTTGCACTTCTGAAATCCatttttcttcctcttcttctttgtgCAGTGCGTTTCAAATGTTCCTGTCTTTTTTCTCCTCGTGTTCCAGTCTttttgtgtgtgtcagactgaGACAAAGACGTCTAGGTAGAGGCGGTCGTAGGATTCCctgaagaagaggatgaggacGAGGCTGAAGGCACAGGAGCCCGTCAAACACCAGTTTA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU313632 True 4366 lncRNA 0.41 2 57140946 57145348

Neighbor

gene id symbol gene type direction distance location
sema5ba LOC106586418 coding upstream 35429 56917452 ~ 57105517 (+)
adcy5 LOC106586396 coding upstream 322416 56683064 ~ 56818530 (+)
LOC110520266 phs1 coding upstream 460379 56668133 ~ 56680567 (+)
rif1 LOC106586392 coding upstream 646102 56463388 ~ 56494844 (+)
tnfaip6 tsg6 coding upstream 678150 56454004 ~ 56462796 (+)
LOC110520274 NA coding downstream 76299 57220562 ~ 57230455 (+)
LOC110520279 LOC106586423 coding downstream 189689 57335037 ~ 57405623 (+)
LOC110520280 NA coding downstream 282077 57427425 ~ 57435274 (+)
LOC118964378 NA coding downstream 285220 57430568 ~ 57430693 (+)
LOC118936397 NA coding downstream 288797 57434145 ~ 57434270 (+)
G276200 NA non-coding upstream 32067 57014335 ~ 57108879 (+)
G276151 NA non-coding upstream 113663 56946153 ~ 57027283 (+)
G275953 NA non-coding upstream 512319 56628314 ~ 56628627 (+)
G275937 NA non-coding upstream 528316 56608773 ~ 56612630 (+)
G277276 NA non-coding downstream 87317 57232665 ~ 57233877 (+)
G277279 LOC106586419 non-coding downstream 94723 57240071 ~ 57245276 (+)
G277285 LOC106586419 non-coding downstream 102186 57247534 ~ 57260425 (+)
G277293 NA non-coding downstream 116440 57261788 ~ 57262087 (+)
G275553 LOC107595854 other upstream 1224813 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 1240203 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 1765420 55371759 ~ 55375526 (+)
G274592 NA other upstream 2265831 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 3299329 53841264 ~ 53841617 (+)
G277296 NA other downstream 119219 57264567 ~ 57264892 (+)
G277973 NA other downstream 644386 57789734 ~ 57790332 (+)
G280315 NA other downstream 2907368 60052716 ~ 60054417 (+)
G281141 NA other downstream 3142040 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 3594891 60740239 ~ 60757350 (+)

Expression


Co-expression Network