Gene
RNA
| Item | Value |
|---|---|
| gene id | G277279 |
| gene name | LOC106586419 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 57240071 ~ 57245276 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: solute carrier family 15 member 2-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU314765 | False | 446 | lncRNA | 0.48 | 6 | 57240071 | 57245276 |
| TU314766 | True | 402 | lncRNA | 0.44 | 3 | 57240895 | 57245169 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110520274 | NA | coding | upstream | 9616 | 57220562 ~ 57230455 (+) |
| sema5ba | LOC106586418 | coding | upstream | 134554 | 56917452 ~ 57105517 (+) |
| adcy5 | LOC106586396 | coding | upstream | 421541 | 56683064 ~ 56818530 (+) |
| LOC110520266 | phs1 | coding | upstream | 559504 | 56668133 ~ 56680567 (+) |
| rif1 | LOC106586392 | coding | upstream | 745227 | 56463388 ~ 56494844 (+) |
| LOC110520279 | LOC106586423 | coding | downstream | 89761 | 57335037 ~ 57405623 (+) |
| LOC110520280 | NA | coding | downstream | 182149 | 57427425 ~ 57435274 (+) |
| LOC118964378 | NA | coding | downstream | 185292 | 57430568 ~ 57430693 (+) |
| LOC118936397 | NA | coding | downstream | 188869 | 57434145 ~ 57434270 (+) |
| clasp1a | LOC106586426 | coding | downstream | 200867 | 57446143 ~ 57554278 (+) |
| G277276 | NA | non-coding | upstream | 6194 | 57232665 ~ 57233877 (+) |
| G276240 | NA | non-coding | upstream | 94723 | 57140946 ~ 57145348 (+) |
| G276200 | NA | non-coding | upstream | 131192 | 57014335 ~ 57108879 (+) |
| G276151 | NA | non-coding | upstream | 212788 | 56946153 ~ 57027283 (+) |
| G277285 | LOC106586419 | non-coding | downstream | 2258 | 57247534 ~ 57260425 (+) |
| G277293 | NA | non-coding | downstream | 16512 | 57261788 ~ 57262087 (+) |
| G277295 | NA | non-coding | downstream | 18830 | 57264106 ~ 57264419 (+) |
| G277302 | NA | non-coding | downstream | 32673 | 57277949 ~ 57297919 (+) |
| G277331 | NA | non-coding | downstream | 76067 | 57321343 ~ 57322819 (+) |
| G275553 | LOC107595854 | other | upstream | 1323938 | 55915329 ~ 55916133 (+) |
| G275542 | LOC106586374 | other | upstream | 1339328 | 55900194 ~ 55900743 (+) |
| LOC110520231 | dbr1 | other | upstream | 1864545 | 55371759 ~ 55375526 (+) |
| G274592 | NA | other | upstream | 2364956 | 54874399 ~ 54875115 (+) |
| G273094 | LOC106586310 | other | upstream | 3398454 | 53841264 ~ 53841617 (+) |
| G277296 | NA | other | downstream | 19291 | 57264567 ~ 57264892 (+) |
| G277973 | NA | other | downstream | 544458 | 57789734 ~ 57790332 (+) |
| G280315 | NA | other | downstream | 2807440 | 60052716 ~ 60054417 (+) |
| G281141 | NA | other | downstream | 3042112 | 60287388 ~ 60303967 (+) |
| G281591 | LOC106586456 | other | downstream | 3494963 | 60740239 ~ 60757350 (+) |
