G277285 (LOC106586419)


Basic Information

Item Value
gene id G277285
gene name LOC106586419
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57247534 ~ 57260425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU314773
GCACATAGACAACAGAGAGGTAGATAATGGTCTTGAACTTGCCCAGCCAAGAGTCAGCGATGAGGGCCCCCAGCACAGGGGTGAAGTAGCAGAGGCTGGAGAAGGCATGGTACACTGCTGTGGAAAGGTTCGGGTCCCAATGCAGGTAGTTGATGAAGTACAGTGTCAGCACCGCTTTCATTCCATAGTAGGAGAAGCGTTCACAGAACTCATTCACCACTATAAAGGAGATGCTGACAGGGTAGTTGGTCCCACATAGTTTCGGTGATTTGCTTGTCTTTccattttcatgaatttttaacTCATGTTCCTTTCGTTTCTCCATTTCCTCTGTTTTTTTCTGGAGTGTTTTTGGCACACTAGCGTCGCATCGGTCGGTGGACCTCTTGACGTGCGTCCAAGTCCGTTCCTCTCTTGTCTGTGACTGAGCGCCCTGCGCAGCATTGGAAAACGCAGCTCTCTTATAACATATGTTCAACCCGTTAGTTAATATTCGACTCCAGATCCATGAATTTGTGACTTCAAGGGCTGTTCAGTACAGATCTGCTACTGTCAGTAGAATAGCATATCTTACTTTACTTTCATATAGCCCAGCATAGTCTGGACTGTGTGGGAACCTGCCTGTGAACCAGATTCTGGATGCACAATAGAGTTCTTGTTTGGGTTTTTGAACCCGCAAACCTGAGCATGGAATGCCTGTTGAAATTGGCTGAAGTGATCATAGCCTGTGAGTCCCACTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU314773 True 740 lncRNA 0.47 5 57247534 57260425

Neighbor

gene id symbol gene type direction distance location
LOC110520274 NA coding upstream 17079 57220562 ~ 57230455 (+)
sema5ba LOC106586418 coding upstream 142017 56917452 ~ 57105517 (+)
adcy5 LOC106586396 coding upstream 429004 56683064 ~ 56818530 (+)
LOC110520266 phs1 coding upstream 566967 56668133 ~ 56680567 (+)
rif1 LOC106586392 coding upstream 752690 56463388 ~ 56494844 (+)
LOC110520279 LOC106586423 coding downstream 74612 57335037 ~ 57405623 (+)
LOC110520280 NA coding downstream 167000 57427425 ~ 57435274 (+)
LOC118964378 NA coding downstream 170143 57430568 ~ 57430693 (+)
LOC118936397 NA coding downstream 173720 57434145 ~ 57434270 (+)
clasp1a LOC106586426 coding downstream 185718 57446143 ~ 57554278 (+)
G277279 LOC106586419 non-coding upstream 2258 57240071 ~ 57245276 (+)
G277276 NA non-coding upstream 13657 57232665 ~ 57233877 (+)
G276240 NA non-coding upstream 102186 57140946 ~ 57145348 (+)
G276200 NA non-coding upstream 138655 57014335 ~ 57108879 (+)
G277293 NA non-coding downstream 1363 57261788 ~ 57262087 (+)
G277295 NA non-coding downstream 3681 57264106 ~ 57264419 (+)
G277302 NA non-coding downstream 17524 57277949 ~ 57297919 (+)
G277331 NA non-coding downstream 60918 57321343 ~ 57322819 (+)
G277337 NA non-coding downstream 71408 57331833 ~ 57332100 (+)
G275553 LOC107595854 other upstream 1331401 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 1346791 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 1872008 55371759 ~ 55375526 (+)
G274592 NA other upstream 2372419 54874399 ~ 54875115 (+)
G273094 LOC106586310 other upstream 3405917 53841264 ~ 53841617 (+)
G277296 NA other downstream 4142 57264567 ~ 57264892 (+)
G277973 NA other downstream 529309 57789734 ~ 57790332 (+)
G280315 NA other downstream 2792291 60052716 ~ 60054417 (+)
G281141 NA other downstream 3026963 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 3479814 60740239 ~ 60757350 (+)

Expression


Co-expression Network