G277662 (LOC106586423)


Basic Information

Item Value
gene id G277662
gene name LOC106586423
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57380911 ~ 57382761 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU315171
CTGATCCGATAAAGCCATCCTTCATCTTGTAGATCTTGGCTCCGTAGCTGGAGAGGTCAGTCCTGTCCAGGAGCAGGGCTGGGCAGCAGCTGGAGGGGCCCTCAGCACTCTCCCTgcgtggaggagggaaggggactAAGGAGGCCCCCGGCACACTGATCTCCACACTGGGGCTGCTGACTTGGGCCTGGGCATGGTCCATGGTCCCCTCCCCCTGCGTCTGActggagggctggaggggagAGCGGGGAGTAGGGCCGGTACATATAGCCATGGTAGAGACTGTGGTATGAATGCTGGTTGTTGGCTGGGGAGTGGGTCCGGTAAAGATGAGAGTGGCTGAGTTAGTAGCACTGGCTGTGGGAGCTGGCGCAACCTCTGCTCTTAAGTCTGGATGACAGGGTGGTGGAGCCCCAGGGGAGCTGTCACTCTGCCTGGCCTCTCCACTGCTTGTCCCCTCACAGCTCCCCATCTCTTCTATCTCTCCACTGCCTATCCTctcactgctctccctctcctcctccttcagtcCCACAGTGGGAGACTGAGAGTCTCTGCTTCCCAATAGAGTCTTACAGTCTCTGCCCGTCCCTGGGGTCTGACTGCCAGTACCAGGCTCTGGCTGTTGGTCTATTGAAGCTGTTACTGTAGTGACATTACCCTGGCTCTCTGTCtgcccaccctctccctctctctgcctcattCTCTTAAACTCCTCAAAGGTGGGGATGTGCAGGCGGCCCATGGGGGGTTTCTTGCGTTCGGCTATTATCTCTGCACAACTCCCAGCGACAGAGATGGACTCGGTGGTGTAGGACTTGGTCATGTCCGGGGTCTGAGGAGTCTCAGGGGAGGTGTGGAGGGTCAGGTTTGGGGTGCTGTTCTGCCGGCGGAGCTGCAGGCGTCTCAGAACCTCTTTCTTGATTTCCTCAGGGCTGGTGATGCGCCGGACACACAGGGGTTTCCCAACGTACCCCTGGTAGGGCGATGAGTCCCTCTCTGAGCACCCCCCGAGGATGGGAGTGGTACTGCCTGGGGTTATCTGCGGTCGAAGAGGCTTTAGGGGTTCTGCTGCTGCCCGGGCACTCTGGAGGCGGAGCTTCTCCCTTAACCCCTTCCTGGCGGTGGTGGTAGCATTCACCCCCCAGTCATCCACGCCGGGGAACAGCCATTGGGGGAAGAGGGGCAGCTCCTTCCTCCCCAGACCCCCCAGACGAGCATTGGGGTAGAAGGCAAGGGTCTCAGGACTGTAGCCCTGGGGCCCTGTCCCCACCGGGGGCCCATCGTACCAGTGGCTGGTGGCAGTGCAGCGGAAGATGAACTCACTGTCCATGCTGCCCCTGTGGGGGGCGCTATAGGGGGAGGAGTAGAGGCCTGGTTCAGACACAGAATTACTCCAGTTCAGGTTCTCCATGCTGCGGTAGAGTCTAGTCCCGCTGTCTGGGTTAATGTTCACACAGGGCCCTGCGTGGTCTGGCTCCaggcctaaccctgaccctgaccctaaccccagcccAGAGTCAGGCCCCCTGGGTGGGTGCTGCACACTGTTGGTGGAGCAGTAACGAAGGCCAAGATTAGTCAACAGGGCACTGCTGTTACACCGGGGCATGACGGGGCACTGGCCTGGGTAAGGAGGGTAGGGGGGTACGCTGTGGCCTCTGAAGCCAGAAAGGGGTTGGGGAAGGGGCAGGTCAGTGAGGCTGAGGCAGGGCTCCAGGTCCATGGTGAGACCAGCGGTGCAGGTGTAGCCCGCAGGGCCGTGGCTGGGGGAGCAGCCCGCTGAGGGGTAATCACATGGCGGAGGGGCCTTCACGTCCGGCATGGCTGCAGTATGAGCCACCATACTGC
>TU315176
CTGTCCAGGAGCAGGGCTGGGCAGCAGCTGGAGGGGCCCTCAGCACTCTCCCTgcgtggaggagggaaggggactAAGGAGGCCCCCGGCACACTGATCTCCACACTGGGGCTGCTGACTTGGGCCTGGGCATGGTCCATGGTCCCCTCCCCCTGCGTCTGActggagggctggaggggagAGCGGGGAGTAGGGCCGGTACATATAGCCATGGTAGAGACTGTGGTATGAATGCTGGTTGTTGGCTGGGGAGTGGGTCCGGTAAAGATGAGAGTGGCTGAGTTAGTAGCACTGGCTGTGGGAGCTGGCGCAACCTCTGCTCTTAAGTCTGGATGACAGGGTGGTGGAGCCCCAGGGGAGCTGTCACTCTGCCTGGCCTCTCCACTGCTTGTCCCCTCACAGCTCCCCATCTCTTCTATCTCTCCACTGCCTATCCTctcactgctctccctctcctcctccttcagtcCCACAGTGGGAGACTGAGAGTCTCTGCTTCCCAATAGAGTCTTACAGTCTCTGCCCGTCCCTGGGGTCTGACTGCCAGTACCAGGCTCTGGCTGTTGGTCTATTGAAGCTGTTACTGTAGTGACATTACCCTGGCTCTCTGTCtgcccaccctctccctctctctgcctcattCTCTTAAACTCCTCAAAGGTGGGGATGTGCAGGCGGCCCATGGGGGGTTTCTTGCGTTCGGCTATTATCTCTGCACAACTCCCAGCGACAGAGATGGACTCGGTGGTGTAGGACTTGGTCATGTCCGGGGTCTGAGGAGTCTCAGGGGAGGTGTGGAGGGTCAGGTTTGGGGTGCTGTTCTGCCGGCGGAGCTGCAGGCGTCTCAGAACCTCTTTCTTGATTTCCTCAGGGCTGGTGATGCGCCGGACACACAGGGGTTTCCCAACGTACCCCTGGTAGGGCGATGAGTCCCTCTCTGAGCACCCCCCGAGGATGGGAGTGGTACTGCCTGGGGTTATCTGCGGTCGAAGAGGCTTTAGGGGTTCTGCTGCTGCCCGGGCACTCTGGAGGCGGAGCTTCTCCCTTAACCCCTTCCTGGCGGTGGTGGTAGCATTCACCCCCCAGTCATCCACGCCGGGGAACAGCCATTGGGGGAAGAGGGGCAGCTCCTTCCTCCCCAGACCCCCCAGACGAGCATTGGGGTAGAAGGCAAGGGTCTCAGGACTGTAGCCCTGGGGCCCTGTCCCCACCGGGGGCCCATCGTACCAGTGGCTGGTGGCAGTGCAGCGGAAGATGAACTCACTGTCCATGCTGCCCCTGTGGGGGGCGCTATAGGGGGAGGAGTAGAGGCCTGGTTCAGACACAGAATTACTCCAGTTCAGGTTCTCCATGCTGCGGTAGAGTCTAGTCCCGCTGTCTGGGTTAATGTTCACACAGGGCCCTGCGTGGTCTGGCTCCaggcctaaccctgaccctgaccctaaccccagcccAGAGTCAGGCCCCCTGGGTGGGTGCTGCACACTGTTGGTGGAGCAGTAACGAAGGCCAAGATTAGTCAACAGGGCACTGCTGTTACACCGGGGCATGACGGGGCACTGGCCTGGGTAAGGAGGGTAGGGGGGTACGCTGTGGCCTCTGAAGCCAGAAAGGGGTTGGGGAAGGGGCAGGTCAGTGAGGCTGAGGCAGGGCTCCAGGTCCATGGTGAGACCAGCGGTGCAGGTGTAGCCCGCAGGGCCGTGGCTGGGGGAGCAGCCCGCTGAGGGGTAATCACATGGCGGAGGGGCCTTCACGTCCGGCATGGCTGCAGTATGAGCCACCATACTGC

Function

NR:

description
uncharacterized protein LOC110520279

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU315171 False 1851 lncRNA 0.61 1 57380911 57382761
TU315176 True 1789 lncRNA 0.61 1 57380911 57382699

Neighbor

gene id symbol gene type direction distance location
LOC118963713 NA coding downstream 44613 57332568 ~ 57336298 (-)
LOC110520278 LOC106586422 coding downstream 50515 57321238 ~ 57330396 (-)
si:dkey-91i10.3 LOC106586420 coding downstream 89384 57270782 ~ 57297762 (-)
LOC110520276 LOC106586419 coding downstream 120672 57232633 ~ 57260239 (-)
slc49a4 dirc2 coding downstream 173953 57143435 ~ 57206958 (-)
LOC110505369 LOC106586424 coding upstream 27220 57409981 ~ 57414314 (-)
LOC110520281 LOC106586425 coding upstream 33321 57416082 ~ 57427344 (-)
LOC118964377 NA coding upstream 98835 57481596 ~ 57481720 (-)
LOC110520284 LOC106586429 coding upstream 215785 57595333 ~ 57609026 (-)
LOC110520285 LOC106586430 coding upstream 249379 57632140 ~ 57734917 (-)
G277661 NA non-coding downstream 1620 57379067 ~ 57379291 (-)
G277660 NA non-coding downstream 5819 57374848 ~ 57375092 (-)
G277656 NA non-coding downstream 13956 57366746 ~ 57366955 (-)
G277653 NA non-coding downstream 21384 57359148 ~ 57359527 (-)
G277649 NA non-coding downstream 29302 57351381 ~ 57351609 (-)
G277666 NA non-coding upstream 8174 57390935 ~ 57391169 (-)
G277671 NA non-coding upstream 14224 57396985 ~ 57397377 (-)
G277675 NA non-coding upstream 18138 57400899 ~ 57401109 (-)
G277676 NA non-coding upstream 21467 57404228 ~ 57404457 (-)
G277642 NA non-coding upstream 53945 57436706 ~ 57436977 (-)
G275250 NA other downstream 1969424 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 2261699 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 2698106 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 4129827 53249926 ~ 53251084 (-)
G277673 LOC106586423 other upstream 20223 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 201625 57584386 ~ 57589183 (-)
G284018 NA other upstream 5331814 62714575 ~ 62715177 (-)
G286522 NA other upstream 7586788 64969549 ~ 64970755 (-)
G286580 marco other upstream 7631498 65014259 ~ 65029736 (-)

Expression


Co-expression Network