G277459


Basic Information

Item Value
gene id G277459
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57590691 ~ 57591256 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU314961
tggtgttctaaaacttttgaccggtagtgtaaatATAAAATGTACTGTATACATGATCTAATCTGGGTTTTTGTCACATTGTTGCAAAGACTCCAGGATGTATTTCTTTCAAGCACATATTTAGGTTTAATATTGAGTAAGGAAATATTACTATTTTACCatttactattactactactgtatatgTGTTCCAATTTCATTTGACTGTTTGTACTGTTTTGCTGTTCTTCTTTGGTTTTACCATTTACTGTTAGTACTATATACATTCCAAGTTTGATTTACTGTTTGTTCTGTGCTAATGCTTATATTTCCTTGGTTTTACCATTTAGTATATGCATTCCAATTTTatttgactgttttactgtttgtttttaaaattatattgaTAATTGTTTTATGTTTATATGTGCAGTGCAGCTATCCAGTGAAACATTTTGATTCATGTGTTTCTAAATGCACTGATGTTTGTAAAAATGATTATTTGTTAAAATAACTCCAAAGCACTCGGTATCATAACCATGTAGTAAATACTGACAATCATGTTTCCTGAATAAAAATTACATTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU314961 True 566 lncRNA 0.28 1 57590691 57591256

Neighbor

gene id symbol gene type direction distance location
LOC110520283 LOC106586429 coding upstream 1464 57571203 ~ 57589227 (+)
clasp1a LOC106586426 coding upstream 39509 57446143 ~ 57554278 (+)
LOC110520280 NA coding upstream 155417 57427425 ~ 57435274 (+)
LOC118936397 NA coding upstream 156421 57434145 ~ 57434270 (+)
LOC118964378 NA coding upstream 159998 57430568 ~ 57430693 (+)
ralb ralb coding downstream 359843 57951099 ~ 57969839 (+)
LOC118964187 NA coding downstream 384809 57976065 ~ 57978805 (+)
LOC110504354 LOC106586434 coding downstream 448601 58039857 ~ 58470598 (+)
pofut2 LOC106586440 coding downstream 1345221 58936477 ~ 58948624 (+)
abca12 abca12 coding downstream 1370384 58961640 ~ 59064792 (+)
G277475 NA non-coding upstream 24233 57566144 ~ 57566458 (+)
G277473 NA non-coding upstream 31569 57558857 ~ 57559122 (+)
G277441 NA non-coding upstream 85214 57480128 ~ 57505477 (+)
G277457 LOC106586429 non-coding downstream 7146 57598402 ~ 57601408 (+)
G277500 NA non-coding downstream 36856 57628112 ~ 57671106 (+)
G277538 NA non-coding downstream 106256 57697512 ~ 57697852 (+)
G277540 NA non-coding downstream 108057 57699313 ~ 57699605 (+)
G277554 NA non-coding downstream 121473 57712729 ~ 57713020 (+)
G277296 NA other upstream 325799 57264567 ~ 57264892 (+)
G275553 LOC107595854 other upstream 1674558 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 1689948 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 2215165 55371759 ~ 55375526 (+)
G274592 NA other upstream 2715576 54874399 ~ 54875115 (+)
G277973 NA other downstream 198478 57789734 ~ 57790332 (+)
G280315 NA other downstream 2461460 60052716 ~ 60054417 (+)
G281141 NA other downstream 2696132 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 3148983 60740239 ~ 60757350 (+)
G281714 NA other downstream 3300268 60891524 ~ 60893778 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G311932 NA non-coding NW_019172862.1 APWO02000125.1 126384 ~ 155954 (-)