G277457 (LOC106586429)


Basic Information

Item Value
gene id G277457
gene name LOC106586429
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57598402 ~ 57601408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU314959
tggaatagcatttatttctcagaacaagaatagactgacaagtttcagaacaaaggtctttgtttctggtaattttgagcctgtaatcgaacccacaaatgctgatgcttcagatactcaattagtctaaagaaggacagttttattgctgctttaatgagaacaacagttttcagcggtgctaacataattgcaaaagtgttttctaatgatcaattagccttttaaaatgataaacttggattagctaatacaacgtgccattggaacacaggagtgatggttgctgataatgggcctctacgcctatgtagatatTCTGACTGCATATCAATTGGGCTCTTCTTCAATCGATGTCAAAAGCCAGTGGACCCTTCATTGAGAAACCAATGAAAAATGATACTTTTGATCCCTGCTCTTTTCCACagagttgacttttgtacattgcACTGACTTCTATCTTTAAGCCTGCGTTCCTGGTATCTGCCAGAATTAATTTCCTTTGTACCTCTCCTGTCACTCTGTAAAGGAGCTCCTTGACTCTCTCATGCTTCCATATTTTGCCATTTGTCCAAAGTGAATCAAAGTCTTCTTCTGGTCTTACACACCACATGATTTCCCTAAGGCGAACTAGGCAAGCATAGCCCGGCTTCTTCCCCAAGAAGAAATGGACAACAGGCAACTTTCCATTGAAAACAGATTTCATCTCGTTCCAGTATGATGTCCGCATCTGTGACACATAGCTTCCCAACTTCTGAGATGCCACTGGTTGTGACATGAGGATATGTTGTGGCCACAGCAGAGTTACAGCAATGAAGTGCAATGATAAACTTTCACCATATGGGATTTGACCTTGAAGAACCTGGCAAAGAAGATCAACAAGGATCTTATACGGGCGAAGGTGTTGAGATTCAGGTTTGACACAGCTTAGCACAACATTGGCATAGATGAAATTGACCATTTCTCTAACGCTCCTTTCAGGATCTTTACTCAGAATGAAGTCATACTGCAGGACTATCTTTTGCATCATGTCACCTGAGGTATCGTTGGAGAGGCAATCCAGAATCCCTGAATGAGTATCAGTTTTTCTACTCTCCAAAAATTGCCTTGCCTTGTGAATTTGGATGCTGATTTTCAGGTTCTTGTTTTTCATTAATTCTGTGGAATCTGTCTTGCAAAAGAGGTCACTGTATCTTTGAAAGCACTGGAAGAGCTTCTGTCGAGTTCTTTCCTCTCGACTGTCTTTCAGGGTGAACCTGGGACCCAAGTTGACATAAAAGCTGTCAAGAAAATCAAAGTGCCTCTTCATGTTATATTTAAGGTTGTACAGAAGATATTCAAAGTCACTGAGAATGTAGTAATATGAGGCATGTTTGTTACGTCTGGAATCATTCCTCATAACATCTTGGATTGTAATTTTGCCAGACAGAACTTCACTCAGAATGTCATGACGGACATTGCCTGAAGAAAACACTGGACATTTTTCCAGTATTTCGATGATGATGACTGCAACCTGAATTTCTCCAAGGCACCCTGCAGTGTTGAAAGGgctgttgtctctcttgttttgtACTCTCAGAGTAGCCTCCTTCTTTGCAATTTCCTGTGTATCCCTGAAGGCCTCTGTTGCTGACTGGGCCGTTCTAAGATAGCCTTTGAGCCTTTCAGGTCTTATGGGATCTTCTTTGTCACTTTGTATATCAATCTTTAGCTCATGCTTGATCACTTGTGCAGATGTGTCAGAAATGTAGGAGTTATCTCTGGAAAGATCTTTTGCAATCTTTGCCCAGTCCTTTGCCTCCCTGAAATCCCTTTTCTTCAGGTATTGGTATCTGGCAAGAAGCTGAGAGATGACAGCATCTTTTTCAAAGCGCTTGGCTGCATTGAATAGAACCTTTTCTTCAACACCTGGTGTCTCCTTTGCAATATCCTGGATGAGAGGTGAAAACTTAGAATCTTCACTCTTGACTGAGTGATGTCTTTTCACTAACATGGTGTGAACATCCTTCATGAGTTTACCTTTGCCCTGTATGCACTCATAAAGCTTGTCTGTGGTGAGCAGTAGATCAGTGATCTCAGCTTTGGTTACACTGTATGTGGTTGTAAGCTCCTTCAAACAGTGCACGGCCATGCTTGAGTGGATCATTCTCACTGCCTCGAATACAACCTTAGTCTCTTCTGTGCAGCAGGTCACTAGAGTGGAAAACTTCCCAAATCCAGCCTTAACATCAGAGGACCCACTATGTGGCTTGGTCTGGAGGCCAAGAAACTcttcacagagagagactgagagtgtTGCACCCTTGCAGTAGACATTCAACAAGACCAGAACAGCAATGAGTTGTGCATGTTTGTGATTTATGTTGAAGCTCTTTAGGGTGTTGCGAGCCACACCCTGTATATACTCGGGTGAAAAGTTCTTCTTCATGATCATGAAAGCGTAGAATGTGTCTGCATTCTTGTAGGTCTTCTCAATCTCCTCCAGTTTTTTCTCGAACTGCCTCTGCTCCATTTCAGAGAGGTTATTGCCAATGAACACAGTGTCTTCAGTTGATTCAGTCTTCTCCCAAGACTCAGCCCTCATGCAATTGAGTAGAATGACCTGCGGGGACCTAGATCCAATGTCCTTCTTGACACATTCCTTCTCAATGAGCTGCTGCAAATCATATGCGTCATCCATCTCCTCAAAGTCATCTAGCATGAGCAACACAGGAATCCGGGACGATTGTTCTGTTGTCTCATACATCAGTAGCTTGACCACCTGCTCGGCAACAACAACATGATCCGCGGTTCTGTCCCTCAGAACAGCACAACGGAACTTGTCTTTCAGTGCCCATAATATATGCATGGCTAGTGTAGTTCCACCACATCCTGGGACATGCAAAAGTTT

Function

NR:

description
sterile alpha motif domain-containing protein 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU314959 True 2890 lncRNA 0.43 2 57598402 57601408

Neighbor

gene id symbol gene type direction distance location
LOC110520283 LOC106586429 coding upstream 9175 57571203 ~ 57589227 (+)
clasp1a LOC106586426 coding upstream 47220 57446143 ~ 57554278 (+)
LOC110520280 NA coding upstream 163128 57427425 ~ 57435274 (+)
ralb ralb coding downstream 349691 57951099 ~ 57969839 (+)
LOC118964187 NA coding downstream 374657 57976065 ~ 57978805 (+)
LOC110504354 LOC106586434 coding downstream 438449 58039857 ~ 58470598 (+)
pofut2 LOC106586440 coding downstream 1335069 58936477 ~ 58948624 (+)
abca12 abca12 coding downstream 1360232 58961640 ~ 59064792 (+)
G277459 NA non-coding upstream 7146 57590691 ~ 57591256 (+)
G277475 NA non-coding upstream 31944 57566144 ~ 57566458 (+)
G277473 NA non-coding upstream 39280 57558857 ~ 57559122 (+)
G277500 NA non-coding downstream 26704 57628112 ~ 57671106 (+)
G277538 NA non-coding downstream 96104 57697512 ~ 57697852 (+)
G277540 NA non-coding downstream 97905 57699313 ~ 57699605 (+)
G277554 NA non-coding downstream 111321 57712729 ~ 57713020 (+)
G277571 NA non-coding downstream 133062 57734470 ~ 57734919 (+)
G277296 NA other upstream 333510 57264567 ~ 57264892 (+)
G275553 LOC107595854 other upstream 1682269 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 1697659 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 2222876 55371759 ~ 55375526 (+)
G274592 NA other upstream 2723287 54874399 ~ 54875115 (+)
G277973 NA other downstream 188326 57789734 ~ 57790332 (+)
G280315 NA other downstream 2451308 60052716 ~ 60054417 (+)
G281141 NA other downstream 2685980 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 3138831 60740239 ~ 60757350 (+)
G281714 NA other downstream 3290116 60891524 ~ 60893778 (+)

Expression


Co-expression Network