G277540


Basic Information

Item Value
gene id G277540
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57699313 ~ 57699605 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU315046
cggcttatggtagagaaattaacattcaattctctgataacagctctggtggacattcctgcagtcagcatgccaattgcacactccttcaaaacgtgagacatctgtggcattgtgtggtgtacacattttagagtggcattttattgtccccagcacaaggtacacctgtgaaatgatcatgctgtttaatcagtttcttgatatgccacacctgtcaggtggatggattatcttggcaaaggagaaatgctcactaacagggatgtaaacaaatttgtgcacagaatttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU315046 True 293 lncRNA 0.42 1 57699313 57699605

Neighbor

gene id symbol gene type direction distance location
LOC110520283 LOC106586429 coding upstream 110086 57571203 ~ 57589227 (+)
clasp1a LOC106586426 coding upstream 148131 57446143 ~ 57554278 (+)
LOC110520280 NA coding upstream 264039 57427425 ~ 57435274 (+)
ralb ralb coding downstream 251494 57951099 ~ 57969839 (+)
LOC118964187 NA coding downstream 276460 57976065 ~ 57978805 (+)
LOC110504354 LOC106586434 coding downstream 340252 58039857 ~ 58470598 (+)
pofut2 LOC106586440 coding downstream 1236872 58936477 ~ 58948624 (+)
abca12 abca12 coding downstream 1262035 58961640 ~ 59064792 (+)
G277538 NA non-coding upstream 1461 57697512 ~ 57697852 (+)
G277500 NA non-coding upstream 28207 57628112 ~ 57671106 (+)
G277457 LOC106586429 non-coding upstream 97905 57598402 ~ 57601408 (+)
G277459 NA non-coding upstream 108057 57590691 ~ 57591256 (+)
G277554 NA non-coding downstream 13124 57712729 ~ 57713020 (+)
G277571 NA non-coding downstream 34865 57734470 ~ 57734919 (+)
G277896 NA non-coding downstream 37026 57736631 ~ 57736847 (+)
G277920 NA non-coding downstream 53820 57753425 ~ 57753694 (+)
G277922 NA non-coding downstream 55169 57754774 ~ 57755005 (+)
G277296 NA other upstream 434421 57264567 ~ 57264892 (+)
G275553 LOC107595854 other upstream 1783180 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 1798570 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 2323787 55371759 ~ 55375526 (+)
G274592 NA other upstream 2824198 54874399 ~ 54875115 (+)
G277973 NA other downstream 90129 57789734 ~ 57790332 (+)
G280315 NA other downstream 2353111 60052716 ~ 60054417 (+)
G281141 NA other downstream 2587783 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 3040634 60740239 ~ 60757350 (+)
G281714 NA other downstream 3191919 60891524 ~ 60893778 (+)

Expression


Co-expression Network