G278909


Basic Information

Item Value
gene id G278909
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 58472325 ~ 58472565 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU316484
TGTCAATGTgttcttgagcaaggcatttaaccctaatttgctctcGGGGTGCAGTACTACCATGGCTGACCTGGTAAgtcaacacatttcactgcatctatccagtgtatgtgacaatagTAAGGTAACCTGacttcagatgtgtccatgtaaacaggattattagggaacttgttgttcttgcaaagcatgtaaaagtttatattaatattaattaactattatattaatctgactttCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU316484 True 241 lncRNA 0.37 1 58472325 58472565

Neighbor

gene id symbol gene type direction distance location
LOC110504354 LOC106586434 coding upstream 1735 58039857 ~ 58470598 (+)
LOC118964187 NA coding upstream 493520 57976065 ~ 57978805 (+)
ralb ralb coding upstream 502486 57951099 ~ 57969839 (+)
LOC110520283 LOC106586429 coding upstream 883098 57571203 ~ 57589227 (+)
clasp1a LOC106586426 coding upstream 921143 57446143 ~ 57554278 (+)
pofut2 LOC106586440 coding downstream 463912 58936477 ~ 58948624 (+)
abca12 abca12 coding downstream 489075 58961640 ~ 59064792 (+)
LOC118944557 NA coding downstream 620579 59093144 ~ 59094205 (+)
LOC110505376 NA coding downstream 1040880 59513445 ~ 59515061 (+)
ikzf2 LOC106586445 coding downstream 1084113 59556678 ~ 59581956 (+)
G278563 NA non-coding upstream 53458 58418645 ~ 58418867 (+)
G278514 NA non-coding upstream 70965 58346110 ~ 58401360 (+)
G278288 NA non-coding upstream 435329 58036759 ~ 58036996 (+)
G278126 NA non-coding upstream 440091 58032002 ~ 58032234 (+)
G278934 NA non-coding downstream 18134 58490699 ~ 58490900 (+)
G278947 NA non-coding downstream 27622 58500187 ~ 58500649 (+)
G278951 NA non-coding downstream 29279 58501844 ~ 58502059 (+)
G279092 NA non-coding downstream 116075 58588640 ~ 58588852 (+)
G279248 NA non-coding downstream 217871 58690436 ~ 58690737 (+)
G277973 NA other upstream 681993 57789734 ~ 57790332 (+)
G277296 NA other upstream 1207433 57264567 ~ 57264892 (+)
G275553 LOC107595854 other upstream 2556192 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 2571582 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 3096799 55371759 ~ 55375526 (+)
G280315 NA other downstream 1580151 60052716 ~ 60054417 (+)
G281141 NA other downstream 1814823 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 2267674 60740239 ~ 60757350 (+)
G281714 NA other downstream 2418959 60891524 ~ 60893778 (+)
G281996 NA other downstream 2561201 61033766 ~ 61037105 (+)

Expression


Co-expression Network