G279365 (LOC106586439)


Basic Information

Item Value
gene id G279365
gene name LOC106586439
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 58778970 ~ 58801391 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU316963
GGCTGAATCtgtcaaatataaaacattagTTTTCCTTTGACTACTGTACAGCATAGTTACAGATATCCTCTAATAATAAAGCTATGACTGAAGAGTTTGGTCCATATAAACTGTGTTCAGGCCTGTTAGACTGTTGACTCCCTCAGGCTTCAGTACAGTTACATGAACAGATTTTGTTGAGGTAAGGCACTTTGAGAAAAGTACTTGCCTTGCCGTTGGCCCTGTTGATCTTGTTCACCAAGTCAGCCAGTAGCACCTTCTCCTCCATAGCACTGTTCAGCTTCTGGTACTTGGGGTTCTTCTGGATCTCCAGATAGTCTCCCTTGAAAGGCTGGCTGACACTGCTGGGGTACAGAGCCTTCTTGTCCTTGAAGATCTCACTGGCCTCAAGTTTCTCCTCATACACAGCCTTCTTCTCCTCTGTGAACTGGCCCCGGTATTTCTTGCACCTCCAGAGGTGGAAGATCCTCCTGAGCTGAGTGTGAGCTCCCTCCAGGAAGCCATAAGGCTTTGCCGGCCAGGTGTTGTCCATAGGGGACATTGTAGTGGTCTTCAGACCAAGGAAGTACTTCTGCatGATTCTCTGGATGGTGAAGTCGTAGATCTTCTTGCCAGCGTTGGCTCTAAAGaacttcctgtactccctgcggACCTGTAACCAAGGAGACAACTGGCCGTCAATCATCCATCCCCATAGTGATCTGATTTGAGGCATGGGGCCAATAGAGAAGAGATTACAGTGGTGATGACTATAGCAACAGGCAGACGTGGTTAGTTACAATGAACTCAAGAAACATCATACaaacaaagggagggagggaaaatctGTTGAGCACTCAACTCAAATCAGAATGGGACTTTCTcctaaatatgtttttttctgaaAATGAGATGTTACATAGTTAATTAATAATGAGGTGGTCAATTTAAATCACACTGATTGGAGTCGACAGGTTAACAGGTTCTGAGAGCTGCTCTGATGTGCCAAGGTGACATGCACATTGTGCAATCAATTAATCTGATGACAGGATTGGGGCCACTCAGACTACAGTAATACATGAGAAAAGGAGTAGATATAGCACCAGACAACAAGACCTATAGAGGGTTAGACATGTTGATGGTTACACAGCTTATCATGCACATGATGCAGACAGGACATACAGCAATtgctagagacagacagacatccatccatccatgtcagGGTCAGTAGTGCCTTTGACCTCTCTGTTAAGAGGCTGCAGTCTTCAAGAACGAgcaaaaaaaagaaggaaaaaagaGCATCTGTGAATGAATTATAACCAACCATAGCCAGCTTATCTAAAGCCCTGCTGGCctcatggagagagcaggataGACATTACACCTCATTGTACATCTTAATAACGTAATGTGTGTCACTGCAGGGATACAGGAGGGGAGGGTAGGTAGGAGGGCATATCCTTTGGTACTGGACTGTCCAGATATCAAATCAGTCACTCTGGAGCTCACATGCATGAACTGTGTCATCACTGTGTGGTTGGTCCCGAGCTATGATAGGCTGAGGCTGACTGCATGCTGGTTCTGTGAAGTGTGCCTACCCCTCCAACACCAAAGACCGGGGAGTGGCTCAGAGGGTAAGGGGTGATTGGTTAGGGTAGAAAGGAGTGGCTGGTTAGGCTAGAAGGGTGGCTGGAGGGTAGGGAAGGCTGGGCAGTGGGCAGGTATACCTGGAGTCCCAGCCAGTAGGCCCAAATGATGGCGACGGCGTGCTTACGCCTGGCCTCCTCCTTCAGGCGCCTCAGCTCCCTGCGTGCCTGAGTCCCGTGCCAGTACGCTGCAATGGTAGTCACAGCCTCCTTGCATCTCTTCTCGTATTTCAGTTGCCGCAAGATGTTGCGGGCCTTCCACCCTCTGACGAAGGACTGCATCACTAGTGTAGCACTCTTGATCTTCTGATATTTATTTTGTTGTGCATATCTGCGGTACCAGGCTGCCACCACCACCTGGCTCTTCTTCAGCAGCAGAAAGTGAGTACGAGACTTCCACCCGCGGTAGATCTTCTGGATCAGGGTGGCCAGGTCCTCCAGAcacgccctcctcctctcctccagagtgAACAGCGTTCTGGGGTTCCTGATGAAGATCTTGGAGCGTCCGTAGGCAAACTCCTCAGTTGGAACAGAACAATCTGTCAGCAGCACCTCCACTCCGTCCCTGGCGGGTCCTCTCCAGTGGGGCCAGGTCTTCTTGCAGAGCATCTTGTATCGCTCCAGACAGGACTCATAGGGCTGGCGGAAGGCGTAGCCAGCCCTCCTCACGCGCACATTCTCCACCAGGCCCAGGTAACGCACCTGGTGACACACTAGTGAGTCGGTGAAGATGTGGGCTACCTTCTTATCGTTGGGCTTGATGCACCtgaggaaaacagacagacaccAAGGCATGGACATGCATGGTCACACAAAAGGTAAT

Function

NR:

description
unconventional myosin-Ib-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU316963 True 2454 lncRNA 0.49 9 58778970 58801391

Neighbor

gene id symbol gene type direction distance location
LOC110504354 LOC106586434 coding upstream 308380 58039857 ~ 58470598 (+)
LOC118964187 NA coding upstream 800165 57976065 ~ 57978805 (+)
ralb ralb coding upstream 809131 57951099 ~ 57969839 (+)
LOC110520283 LOC106586429 coding upstream 1189743 57571203 ~ 57589227 (+)
clasp1a LOC106586426 coding upstream 1227788 57446143 ~ 57554278 (+)
pofut2 LOC106586440 coding downstream 135086 58936477 ~ 58948624 (+)
abca12 abca12 coding downstream 160249 58961640 ~ 59064792 (+)
LOC118944557 NA coding downstream 291753 59093144 ~ 59094205 (+)
LOC110505376 NA coding downstream 712054 59513445 ~ 59515061 (+)
ikzf2 LOC106586445 coding downstream 755287 59556678 ~ 59581956 (+)
G279297 LOC106586437 non-coding upstream 17051 58743907 ~ 58761919 (+)
G279300 NA non-coding upstream 41541 58737113 ~ 58737429 (+)
G279267 NA non-coding upstream 76996 58701763 ~ 58701974 (+)
G279252 NA non-coding upstream 86221 58692490 ~ 58692749 (+)
G279248 NA non-coding upstream 88233 58690436 ~ 58690737 (+)
G279385 NA non-coding downstream 22464 58823855 ~ 58830308 (+)
G279481 NA non-coding downstream 131993 58933384 ~ 58933696 (+)
G279597 NA non-coding downstream 251381 59052772 ~ 59055118 (+)
G279855 NA non-coding downstream 370278 59171669 ~ 59171914 (+)
G279890 NA non-coding downstream 397042 59198433 ~ 59198651 (+)
G277973 NA other upstream 988638 57789734 ~ 57790332 (+)
G277296 NA other upstream 1514078 57264567 ~ 57264892 (+)
G275553 LOC107595854 other upstream 2862837 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 2878227 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 3403444 55371759 ~ 55375526 (+)
G280315 NA other downstream 1251325 60052716 ~ 60054417 (+)
G281141 NA other downstream 1485997 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 1938848 60740239 ~ 60757350 (+)
G281714 NA other downstream 2090133 60891524 ~ 60893778 (+)
G281996 NA other downstream 2232375 61033766 ~ 61037105 (+)

Expression


Co-expression Network