G279481


Basic Information

Item Value
gene id G279481
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 58933384 ~ 58933696 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU317085
gttcagtcttctgagggggaataggttttgtcatgtcCTCTaaacgactgtcttggtgtatttggaccattatagtttgttggtgatgtgaataccaacgaacttgaagctctcaacctgctccactacagccctgttgatgagaatggggatgtgcttggtcctccttttcctgtagtccacaatcatctcttttgtcttgattacgttgagggataggttgttattctggcaccacccagtcaggtctctgacttcctccctataggctgcctcgtcgttgtcagtgatcaggcctaccactgttgtgtca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU317085 True 313 lncRNA 0.47 1 58933384 58933696

Neighbor

gene id symbol gene type direction distance location
LOC110504354 LOC106586434 coding upstream 462794 58039857 ~ 58470598 (+)
LOC118964187 NA coding upstream 954579 57976065 ~ 57978805 (+)
ralb ralb coding upstream 963545 57951099 ~ 57969839 (+)
LOC110520283 LOC106586429 coding upstream 1344157 57571203 ~ 57589227 (+)
clasp1a LOC106586426 coding upstream 1382202 57446143 ~ 57554278 (+)
pofut2 LOC106586440 coding downstream 2781 58936477 ~ 58948624 (+)
abca12 abca12 coding downstream 27944 58961640 ~ 59064792 (+)
LOC118944557 NA coding downstream 159448 59093144 ~ 59094205 (+)
LOC110505376 NA coding downstream 579749 59513445 ~ 59515061 (+)
ikzf2 LOC106586445 coding downstream 622982 59556678 ~ 59581956 (+)
G279385 NA non-coding upstream 103076 58823855 ~ 58830308 (+)
G279365 LOC106586439 non-coding upstream 131993 58778970 ~ 58801391 (+)
G279297 LOC106586437 non-coding upstream 171465 58743907 ~ 58761919 (+)
G279300 NA non-coding upstream 195955 58737113 ~ 58737429 (+)
G279267 NA non-coding upstream 231410 58701763 ~ 58701974 (+)
G279597 NA non-coding downstream 119076 59052772 ~ 59055118 (+)
G279855 NA non-coding downstream 237973 59171669 ~ 59171914 (+)
G279890 NA non-coding downstream 264737 59198433 ~ 59198651 (+)
G279897 NA non-coding downstream 269256 59202952 ~ 59203160 (+)
G279911 NA non-coding downstream 278783 59212479 ~ 59212718 (+)
G277973 NA other upstream 1143052 57789734 ~ 57790332 (+)
G277296 NA other upstream 1668492 57264567 ~ 57264892 (+)
G275553 LOC107595854 other upstream 3017251 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 3032641 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 3557858 55371759 ~ 55375526 (+)
G280315 NA other downstream 1119020 60052716 ~ 60054417 (+)
G281141 NA other downstream 1353692 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 1806543 60740239 ~ 60757350 (+)
G281714 NA other downstream 1957828 60891524 ~ 60893778 (+)
G281996 NA other downstream 2100070 61033766 ~ 61037105 (+)

Expression


Co-expression Network