G280127


Basic Information

Item Value
gene id G280127
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 59372002 ~ 59372403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU317769
tggcttgcttctgaagctaagcagggttggtcctggacgggagaccagatgctgctggaagtggtgttggagggccagtaggaggcactctttcctctggtctaaaaaaaatatcccaataccccaggacagggattggggacactgccctgtgtagggtgccgtctttcggatgggacgttaaacgggtgtcctgactctctgaggtcattaaagatcccatggcacttatcgtaagagtaggggtgttaaccccggtgtcctggctaaattcccaatctggccctcaaaccatcacggtcacctaataatccccagtttacaattggctcattcatccccctcctctcccctgtaactattccccaggtcgttgctgcaaatgagaacgtgttctcagtc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU317769 True 402 lncRNA 0.52 1 59372002 59372403

Neighbor

gene id symbol gene type direction distance location
LOC118944557 NA coding upstream 277797 59093144 ~ 59094205 (+)
abca12 abca12 coding upstream 307210 58961640 ~ 59064792 (+)
pofut2 LOC106586440 coding upstream 423378 58936477 ~ 58948624 (+)
LOC110504354 LOC106586434 coding upstream 901412 58039857 ~ 58470598 (+)
LOC118964187 NA coding upstream 1393197 57976065 ~ 57978805 (+)
LOC110505376 NA coding downstream 141042 59513445 ~ 59515061 (+)
ikzf2 LOC106586445 coding downstream 184275 59556678 ~ 59581956 (+)
erbb4b LOC106586446 coding downstream 498156 59870559 ~ 60052294 (+)
LOC110505381 NA coding downstream 895239 60267642 ~ 60269899 (+)
myl1 LOC100135947 coding downstream 904842 60277245 ~ 60286080 (+)
G280120 NA non-coding upstream 6806 59364984 ~ 59365196 (+)
G280109 NA non-coding upstream 18202 59353596 ~ 59353800 (+)
G280021 NA non-coding upstream 32516 59338654 ~ 59339486 (+)
G279996 NA non-coding upstream 71574 59300025 ~ 59300428 (+)
G279977 NA non-coding upstream 94545 59276998 ~ 59277457 (+)
G280132 NA non-coding downstream 3578 59375981 ~ 59376294 (+)
G280137 NA non-coding downstream 8348 59380751 ~ 59380955 (+)
G280142 NA non-coding downstream 15120 59387523 ~ 59387743 (+)
G280143 NA non-coding downstream 15571 59387974 ~ 59388220 (+)
G280168 NA non-coding downstream 37269 59409672 ~ 59410080 (+)
G277973 NA other upstream 1581670 57789734 ~ 57790332 (+)
G277296 NA other upstream 2107110 57264567 ~ 57264892 (+)
G275553 LOC107595854 other upstream 3455869 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 3471259 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 3996476 55371759 ~ 55375526 (+)
G280315 NA other downstream 680313 60052716 ~ 60054417 (+)
G281141 NA other downstream 914985 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 1367836 60740239 ~ 60757350 (+)
G281714 NA other downstream 1519121 60891524 ~ 60893778 (+)
G281996 NA other downstream 1661363 61033766 ~ 61037105 (+)

Expression


Co-expression Network