G280240


Basic Information

Item Value
gene id G280240
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 59474706 ~ 59476988 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU317890
aaaatgcaaattaattacttaaaaatcatcaATTTGGTTTTTCTAGATttatgttttagattccgtctctcacagttgaagtgtacctatgatttaaaatattacagacctctacatgctttgtaagtaggaaaacctgcaaaatcggcagtgtatcaaatacttgttcttcccactgtaggtaggtttagtctgacctgttcaaacttcaacatagtatatgtttgtgtgtctgaTATCACTTGTCCATTACTGCCATTGCTAATAGAacagtgactgtgtgtatatgtTCACCGATTCATGAGATGCAGAGAGAACTGGCACTCAACACATCCACTCAACACATCCACAATGAGGTGATTGCTAATACAACAGTACAGCACAAATGTTCAGTGAAATCAACACCCTTTTCATTCCATATGTCACTGATTAACTTTACCTCAACTCTTCCTATTTCTACTGGAGATTATTTCCCAGACGGCAGCCTCAGTCGTTTGACTGGGAGACCATCATTGGGTAGGTTTTATCTGACCTGTTCAAACTTCAACATGTTTGTGTGTCAGATATAACATATTTtaactgccattggtaatagaacagtgactgtgtgtatgtgttcacatAAACATGTATGGAGCCAGGACACGGAGACTTGCAAGATGATGTGATGAagtccagactgacagacaggcttgatactgatgtttCTAAATGGTGAGGTACCTGGCACTCTGCATAAAACATTTACTAGACACAACTTTTACTTGTATTGTTGTTTTTATTATTCAATTGAATGGTACCAGTCAATATTGGTAGGGAAAAAccaaccctgtgtattctgcatCAGGATCAGGGAACTCCTATTGTATAAGGGACACCACacaggaaggtactgtatgaccactctgacatgtttgccaaggtaaccccattaccaccacacaggaaggtactgtatgagcactgacatgttaccatggtaaccccattaccaccacacaggaaggtactgtatgaccactctgacatgttaccatggtaaccccaataccaccacacaggaaggtactgtatgaccactgacatgttaccatggtaaccccattaccaccacacaggaaggtactgtatgaccactctgacatgttaccatggtaaccccattgccaccacacaggaaggtactgtatgaccactctgacatgttaccatggtaaccccattaccaccacacaggaaggtactgtatgaccactctgacatgttaccatggtaaccccattaccaccacacaggaaggtactgtatgaCCATAAGCAGAACACTGCTTATATAACATGATCTATAGGGCTGCTTATTCTACATAGACCTGTTACTACATTTAAAAGTTCTAAAAACACTTagtttagaatatctacataaattCAGAAATTGAATTCTTCTCAtattactctgtaggctactgacctaTTCAAAGGTAATTTGCTGTAATGTGATTGCTCTTTGCTTTCATATTGTTTTTGATTGTTGTGTTGCTATGATCAGGGCATCCTTGTGAATGAGACCCTGGTCTCGTGGAGTTTTCCTGGATATATaaagaatatataaataaataaaagcttccACTGGCATCTCACCATACATCTGGCAGTGGTTATTGAACTCAACCTTGTCATTGAGTGGGGGGGAAACAGCTCCGGGCAAGGTTCtgacagatgggtgtgtcttggtggTGGTAAGGACATGCCCAATAAATACCCACATCAAACCATACCCCCAAGTCAACTCATATTTGGCTTCTGTTATGGACGCCAGCATTTCTTGAGGAGCAAGCCAAAAAATGAGGCCAAATCAGCGGGTGCAGTTCCCCTTTAAGTCATTTGATCTGCAATACTCACTCGGGTGGAAAGCTCTCCACTTTATCATGGGAATGCCTCTGTGACACTTAAAGAAGTACCCGtgtagaagagacagaagagacgcCTGAGGGTCTGTTTGCCTTGCCATTGCATTATGCCTCAAGTGACACACTACTGTATGCTCCACTTGGAACAAGCAGTGCTCTGCTTCCTTCCTCCCAGATACAGAATAAGATGTATCGTCTCTCTGTTGCCACCCTCACTGTGTAGAGACTCATCTGATGTGATTATTGCCAGTTCAGTGATCACTGAAGTAGCCAGGGGAATGGCCTCACTTTTCCAGTCCAAATCCCTACGTCTGGCCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU317890 True 2224 lncRNA 0.42 2 59474706 59476988

Neighbor

gene id symbol gene type direction distance location
LOC118944557 NA coding upstream 380501 59093144 ~ 59094205 (+)
abca12 abca12 coding upstream 409914 58961640 ~ 59064792 (+)
pofut2 LOC106586440 coding upstream 526082 58936477 ~ 58948624 (+)
LOC110504354 LOC106586434 coding upstream 1004116 58039857 ~ 58470598 (+)
LOC118964187 NA coding upstream 1495901 57976065 ~ 57978805 (+)
LOC110505376 NA coding downstream 36457 59513445 ~ 59515061 (+)
ikzf2 LOC106586445 coding downstream 79690 59556678 ~ 59581956 (+)
erbb4b LOC106586446 coding downstream 393571 59870559 ~ 60052294 (+)
LOC110505381 NA coding downstream 790654 60267642 ~ 60269899 (+)
myl1 LOC100135947 coding downstream 800257 60277245 ~ 60286080 (+)
G280168 NA non-coding upstream 64626 59409672 ~ 59410080 (+)
G280143 NA non-coding upstream 86486 59387974 ~ 59388220 (+)
G280142 NA non-coding upstream 86963 59387523 ~ 59387743 (+)
G280137 NA non-coding upstream 93751 59380751 ~ 59380955 (+)
G280132 NA non-coding upstream 98412 59375981 ~ 59376294 (+)
G280324 NA non-coding downstream 116142 59593130 ~ 59593400 (+)
G280331 NA non-coding downstream 130549 59607537 ~ 59691190 (+)
G280950 NA non-coding downstream 583978 60060966 ~ 60061230 (+)
G280977 NA non-coding downstream 611176 60088164 ~ 60088370 (+)
G280994 NA non-coding downstream 623208 60100196 ~ 60100412 (+)
G277973 NA other upstream 1684374 57789734 ~ 57790332 (+)
G277296 NA other upstream 2209814 57264567 ~ 57264892 (+)
G275553 LOC107595854 other upstream 3558573 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 3573963 55900194 ~ 55900743 (+)
LOC110520231 dbr1 other upstream 4099180 55371759 ~ 55375526 (+)
G280315 NA other downstream 575728 60052716 ~ 60054417 (+)
G281141 NA other downstream 810400 60287388 ~ 60303967 (+)
G281591 LOC106586456 other downstream 1263251 60740239 ~ 60757350 (+)
G281714 NA other downstream 1414536 60891524 ~ 60893778 (+)
G281996 NA other downstream 1556778 61033766 ~ 61037105 (+)

Expression


Co-expression Network