G280939


Basic Information

Item Value
gene id G280939
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60050858 ~ 60054435 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU318623
gacagATTCATGTAACAAAACTGCGGGAAAAGTATTTAAATGTTATAGCCTTGGGAATGGTAAAACCTTCAGTTGGAAGCAGCGCTGAAGTAGATTCAGACAATAACATCCTGTAAAGCAAagggatggaaagagagtagAGCTCTCCTCCATGGAACCTCAGCCACACATCAGAGGCTCTGCTGCTACAGCTCTGTCTGATGCCTGACCCAAGACTAGGACCAGGACCAGGAACAGGTCTAGGACCAGCTCCAGGACCAGGAACAGGTCTAGGACCAGCTCCAGGACTAGGACCAGGACCAGGAACAGGTCTAGGACCAGCTCCAGGACCAGGACTAGGGCCAGGAACAGGTCTAGGACCATCTCCAGGACTAAGACCAGGACCAGGACTAGGGCCAGGAACAGGACTAGGGCGAGGACCAGGACTAGGAACAGGACCAGGACTAGGGCCAGGACCAGGATGAAGACCAGGACTAGGACCAGGACTTGGACCAGGGCCAGGAACAGGACTAGGGCCAGGAACAGGTATAGGACCAGCTCCAGGACTAAAACCAGGACCAGGACTAGTACTAGGACCAAGACTAAGACCAGTACTTGGACCAGGACTAGGGCCAGGAACAGGTCTAGGACAAGGACCAGACATTCTAGACTACAGTCAGATAAAtcccaatcaaccaatcaatgaaATCATGAAGAACCAATTCAATAAACCAAACCAATAACCATAGACCAACAGACTAATATGTCAATTTAAATCTACAATATAATCCAGGCAAAAAGCTATTTGGTTTACCCAATTCCACCATCAGAGAGCAGGGGTCAGGGTCTGACTGGATATACGAGGGATACCAGTAAATCTAGCATCATGTGGCTGCCCAAGAAGAGCAAAGGCTATATGTGTTTGTTAAATTGTGTCTGTGGGTACAGTATGTACGCATTATCCAAGGCCCATAGTGCTTCCTCAGACCACAGATAGGAATGAAATACATATTGATTATGAATACCGGTTAAATTGATACGAaatgatggtgagagagagatatacagtagatgCAGGATAGACAAGTATTCATCAGTAATGCAACAGAGCCTCAATCTCTCCAATGGGTGGGTGGTTTCTGTACAAAATCAAAAAATGGctatagggggaggagaggagactgaaaTATACACCCAAAATAAGGAAAAGGCACCTCTACCCTGTGAGCAAGAGGTTTTTAACCACAAAGTCCACCAAGTTGTTCTAAATACAGCTACGAGGGAAACAGCGGGGACTATAAAAACTGCAAGCTTTTTAAAATCAGAATTCACTGGTTaaattacatatatatatatacagaaataAAAACCAAGAAGAAAACTGATCACACACAATAATATTCAACAAAAAGCAGTAATATGACAGAATTAAAAGAGAAACCAAAAACATCATGGCAGCCCAAAAAGTATTGTTTCCCTCTATTTACAAATGCACCTGGCCAATACTTCCACTATCTATAAAAATACTATTCACATTTTATCGGTTGAAGAGCGGTATTAAAATGATCAAGAACAGCCATTCAGTATAATGCCTGTGTGTCATAAAAAGAAATTCCCTCCCATATATTAGTTACCAGCAAATCAACATGTATTGTAAACTGTGCTTACTCTACAACTACTGTCTTTTCCTGTCATTTTAAAGGAAGGAATACGCAATAGTACCACTGTAAAATGAGCTGTATTACAAAAGTacagtgtttttgtgtgttataGTATATGATGAATTGTATGAATATTGTGTTAGTTAACTGGTATGTATCAATAAGTGAAGTTCTGAGATGCACTGAGTGCAGCCTCTCATACAGTATTTAGTTGTACATGTAGGGATTTAAATCCTATCTATGTGCAAAGGAATACTTCAGCCCATGGGGAAACAGGCAAGGCTTATTGGAACAAACTGTACATATTAATACCATAATAATTACAAAAATGTCCTTTAGAAATTAATTTCGCACTGTAAGAAATTACAGGAATACCGTCCATCATGTACTTTAGGGATTTACTCCAAGTTGTAGATCCAGGAGGGAGTAACATTGAGATACAACAGTGTGAAAGAGGCCTTCACCGAAATGTCTGTGCCCTATCTCATAGCAACAGAGTCAAAGAAACAACAATCTATTGCCATTATGAACCCCCCATTGAGATACACTAAGAAACATCACCATTAACACAATTTACAATACTCTTAAAGATGTCATGGTTACATCCATTTTGACTATTATACCCCAAAACCGTAAATACAGTAGTAGCTGAATCAAATAAATGTGACCGTTTCAACATTGCTGATTAAAATTAGTGTGCACAATCAGTGTTGAGATGAAACAGAGGGAATATTTGTGCTCCTTTTGTACCTAAAGGATTTTGCTAAAACAACCCGAAGACATAATTCATTAAAGTGTTGTGATTCTACGACTCTCACTTCTGAAACTCCTCGCCGGTCGCTTCTTCAAAATCATTTTGGTCGTGTTCAAGTTGCTCCTCATGAACTGCTTCATGGTAGTCGGTTTGTAAATACACaccactcaacgtcaacagtgcTTGCTACATACATTCCTTTAGTCATCTTTTTGAGATAAAGTAAAACTCCAGTCTCTTCCTCTGCTTCCAGCACTGCATCCAAACGCTGCTTCTCAGACAACCTATTGTAACACTGATGTATTGATCTCCTAACATCTGTGGAATGCTAATATCTCTGCCTTTTACCCTGCGTAGGATGGAAACTATTGCCCTGTCCGCCAGTGTTTATCTCCGCCATGTTGCTTGGAGATGTTGGGTGATATGATTTCcccacagaacagaacagcagaacAGAGCAGCTTTAGAGGACAAGGAGAGCTATCAGCACACTGCTAGGTAAAAGACCCTTGTGATGGGTTTCAAATAAGGGTTTACCTTAAGGGATTGTTTCTCATTAGCTTCAGTATTTAATACACAGGGCACTGGTGTTGTATTCTCCTATAGACTGGCTTTAATTGACCAGTAAGGTCCATCACGAGTCCTCTTAACATCACTCTCATAGGCTGTCATTGCACCAACACCAATATCCCCATGTTCATAGTCTGGGATAAAAC
>TU318624
gacagATTCATGTAACAAAACTGCGGGAAAAGTATTTAAATGTTATAGCCTTGGGAATGGTAAAACCTTCAGTTGGAAGCAGCGCTGAAGTAGATTCAGACAATAACATCCTGTAAAGCAAagggatggaaagagagtagAGCTCTCCTCCATGGAACCTCAGCCACACATCAGAGGCTCTGCTGCTACAGCTCTGTCTGATGCCTGACCCAAGACTAGGACCAGGACCAGGAACAGGTCTAGGACCAGCTCCAGGACTAGGACCTGGAACAGGTCTAGGACCAGCTCCAGGACCAGGACTAGGACCAGAACTAGGACCAGGTCTAGGACCAGCTCCAGGACCAGGACTAGGGCCAGGAACAGGTCTAGGACCATCTCCAGGACTAAGACCAGGACCAGGACTAGGGCCAGGAACAGGACTAGGGCGAGGACCAGGACTAGGGCCAGGAACAGGACCAGGACTAGGGCCAGGACCAGGATGAAGACCAGGACCAGGACTAGGACCAGGACTTGGACCAGGGCCAGGAACAGGACTAGGGCCAGGAACAGGTATAGGACCAGCTCCAGGACTAAAACCAGGACCAGGACTAGTACTAGGACCAAGACTAAGACCAGTACTTGGACCAGGACTAGGGCCAGGAACAGGTCTAGGACAAGGACCAGACATTCTAGACTACAGTCAGATAAAtcccaatcaaccaatcaatgaaATCATGAAGAACCAATTCAATAAACCAAACCAATAACCATAGACCAACAGACTAATATGTCAATTTAAATCTACAATATAATCCAGGCAAAAAGCTATTTGGTTTACCCAATTCCACCATCAGAGAGCAGGGGTCAGGGTCTGACTGGATATACGAGGGATACCAGTAAATCTAGCATCATGTGGCTGCCCAAGAAGAGCAAAGGCTATATGTGTTTGTTAAATTGTGTCTGTGGGTACAGTATGTACGCATTATCCAAGGCCCATAGTGCTTCCTCAGACCACAGATAGGAATGAAATACATATTGATTATGAATACCGGTTAAATTGATACGAaatgatggtgagagagagatatacagtagatgCAGGATAGACAAGTATTCATCAGTAATGCAACAGAGCCTCAATCTCTCCAATGGGTGGGTGGTTTCTGTACAAAATCAAAAAATGGctatagggggaggagaggagactgaaaTATACACCCAAAATAAGGAAAAGGCACCTCTACCCTGTGAGCAAGAGGTTTTTAACCACAAAGTCCACCAAGTTGTTCTAAATACAGCTACGAGGGAAACAGCGGGGACTATAAAAACTGCAAGCTTTTTAAAATCAGAATTCACTGGTTaaattacatatatatatatacagaaataAAAACCAAGAAGAAAACTGATCACACACAATAATATTCAACAAAAAGCAGTAATATGACAGAATTAAAAGAGAAACCAAAAACATCATGGCAGCCCAAAAAGTATTGTTTCCCTCTATTTACAAATGCACCTGGCCAATACTTCCACTATCTATAAAAATACTATTCACATTTTATCGGTTGAAGAGCGGTATTAAAATGATCAAGAACAGCCATTCAGTATAATGCCTGTGTGTCATAAAAAGAAATTCCCTCCCATATATTAGTTACCAGCAAATCAACATGTATTGTAAACTGTGCTTACTCTACAACTACTGTCTTTTCCTGTCATTTTAAAGGAAGGAATACGCAATAGTACCACTGTAAAATGAGCTGTATTACAAAAGTacagtgtttttgtgtgttataGTATATGATGAATTGTATGAATATTGTGTTAGTTAACTGGTATGTATCAATAAGTGAAGTTCTGAGATGCACTGAGTGCAGCCTCTCATACAGTATTTAGTTGTACATGTAGGGATTTAAATCCTATCTATGTGCAAAGGAATACTTCAGCCCATGGGGAAACAGGCAAGGCTTATTGGAACAAACTGTACATATTAATACCATAATAATTACAAAAATGTCCTTTAGAAATTAATTTCGCACTGTAAGAAATTACAGGAATACCGTCCATCATGTACTTTAGGGATTTACTCCAAGTTGTAGATCCAGGAGGGAGTAACATTGAGATACAACAGTGTGAAAGAGGCCTTCACCGAAATGTCTGTGCCCTATCTCATAGCAACAGAGTCAAAGAAACAACAATCTATTGCCATTATGAACCCCCCATTGAGATACACTAAGAAACATCACCATTAACACAATTTACAATACTCTTAAAGATGTCATGGTTACATCCATTTTGACTATTATACCCCAAAACCGTAAATACAGTAGTAGCTGAATCAAATAAATGTGACCGTTTCAACATTGCTGATTAAAATTAGTGTGCACAATCAGTGTTGAGATGAAACAGAGGGAATATTTGTGCTCCTTTTGTACCTAAAGGATTTTGCTAAAACAACCCGAAGACATAATTCATTAAAGTGTTGTGATTCTACGACTCTCACTTCTGAAACTCCTCGCCGGTCGCTTCTTCAAAATCATTTTGGTCGTGTTCAAGTTGCTCCTCATGAACTGCTTCATGGTAGTCGGTTTGTAAATACACaccactcaacgtcaacagtgcTTGCTACATACATTCCTTTAGTCATCTTTTTGAGATAAAGTAAAACTCCAGTCTCTTCCTCTGCTTCCAGCACTGCATCCAAACGCTGCTTCTCAGACAACCTATTGTAACACTGATGTATTGATCTCCTAACATCTGTGGAATGCTAATATCTCTGCCTTTTACCCTGCGTAGGATGGAAACTATTGCCCTGTCCGCCAGTGTTTATCTCCGCCATGTTGCTTGGAGATGTTGGGTGATATGATTTCcccacagaacagaacagcagaacAGAGCAGCTTTAGAGGACAAGGAGAGCTATCAGCACACTGCTAGGTAAAAGACCCTTGTGATGGGTTTCAAATAAGGGTTTACCTTAAGGGATTGTTTCTCATTAGCTTCAGTATTTAATACACAGGGCACTGGTGTTGTATTCTCCTATAGACTGGCTTTAATTGACCAGTAAGGTCCATCACGAGTCCTCTTAACATCACTCTCATAGGCTGTCATTGCACCAACACCAATATCCCCATGTTCATAGTCTGGGATAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU318623 False 3110 lncRNA 0.41 5 60050858 60054435
TU318624 True 3134 lncRNA 0.41 5 60050858 60054435

Neighbor

gene id symbol gene type direction distance location
vwc2l LOC106586444 coding downstream 906022 59115416 ~ 59144836 (-)
LOC110520290 myo1b coding downstream 1118604 58775631 ~ 58932254 (-)
LOC110520289 LOC106586438 coding downstream 1276230 58766427 ~ 58774628 (-)
LOC110520288 LOC106586437 coding downstream 1289017 58743901 ~ 58761841 (-)
LOC118964362 NA coding downstream 1548159 58502557 ~ 58502699 (-)
cps1 cps1 coding upstream 111543 60165978 ~ 60253769 (-)
map2 LOC106586448 coding upstream 237968 60292403 ~ 60416303 (-)
kansl1l NA coding upstream 367206 60421641 ~ 60463431 (-)
LOC118944680 tas2r8 coding upstream 443139 60497574 ~ 60523192 (-)
heg1 LOC106586449 coding upstream 490669 60545104 ~ 60560296 (-)
G280877 NA non-coding downstream 47432 59933219 ~ 60003426 (-)
G280796 NA non-coding downstream 226848 59823584 ~ 59824010 (-)
G280647 NA non-coding downstream 409863 59638628 ~ 59640995 (-)
G280605 NA non-coding downstream 465706 59584997 ~ 59585152 (-)
G280170 NA non-coding downstream 637694 59412961 ~ 59413164 (-)
G280966 NA non-coding upstream 22379 60076814 ~ 60077191 (-)
G280986 NA non-coding upstream 40180 60094615 ~ 60094873 (-)
G281005 NA non-coding upstream 52748 60107183 ~ 60107645 (-)
G281227 NA non-coding upstream 69670 60124105 ~ 60124308 (-)
G281242 NA non-coding upstream 101617 60156052 ~ 60156393 (-)
G277749 LOC106586429 other downstream 2461675 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 2647283 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 2753096 57270782 ~ 57297762 (-)
G275250 NA other downstream 4639371 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 4931646 55068639 ~ 55122013 (-)
G284018 NA other upstream 2660140 62714575 ~ 62715177 (-)
G286522 NA other upstream 4915114 64969549 ~ 64970755 (-)
G286580 marco other upstream 4959824 65014259 ~ 65029736 (-)
G286638 NA other upstream 5000265 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 5180745 65235180 ~ 65235908 (-)

Expression


Co-expression Network