G281052


Basic Information

Item Value
gene id G281052
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60164479 ~ 60166148 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU318746
GGTGAATACTGCTTTTATTAGATTTGTATGTAGGCAGAATGCAGATGTTTAGAAAAGGGTGAGTACTTTGAAATGTAAGCTCATGTTATTTATAAACATGGACACACAAATACATGTAAAATACAACTAATCAGCTGTTAGGATCGTTAACTAAAATTGTCCCCAAAATAACTCAAAACTTTCAGatagttttttttaaaagacAGAAGCACTTTGGATACATTCATAACTTGATATCGGCCTCAAAATATCAAGAATGTAGAAGCTATCTCGAAGGGTGCCTAGTAaaacacactcaacacacacacactcaaccagtggtgtaaagtatttcagtaaaaatactttaaagtactacttaagaagTTTTtgttgggggtatctgtactttactttgctatttatattttCGACAAATTTTACTAcattttactacattcctaaagaaaataatgtacattttacctgacacccaaaagtactcgttacattttgaatgcttagtaggacaggaaaattgtcccaTTCAcggacttatcaagagaacacgtggtcatccctgctgcctctgatctggtggaatcACTAAACAAAATGCATATTTTcaaaatgatgtctgagtgttggagtgtgcccctggttatcTGTACATTTTTAATACAAGACAATGATGCCGTccgctttgcttaatataaggaatttgaaatgatttctacCTTAACTTTAGACACTtaagaaccaaatacttttagacttttacttaagGGGGGTGACTCACTtgtacttgagtaactttctaagTATCTAtagttttactcaagtatgacaattgggtacttttcccaacactgcactcaacacacacatacaatcctAGTTGGGTCCATAGCACCATCTTTAGTCCATAACCAAAATGCATGAATGCATGAAGCAGTAGTGTGGGTCACTGGCCAAACTGAGTCCTTTAATGTAGCAGGCATTACTACGTACAAATCACACCGTGCCGACCAACGGCTGAAAGCAGCGGCTGGCCGCGGTGGGATAGTTAAAGACGATCCGTGGTGAGTCAACATGTAGAGTCACTGGAACAGAAAATGATGCCCGGTGTTCTGGTCAGAGATAATAGGATGGCCACCCGCTGCTTTTAAAAGTTTGTCAGCAAGGTCTGTTTTAGACTTTAAAATGTTGAAGGCTTCTGAACTGGCGAACAACATATCAAAGGCGTTTTATGTGTTTTCAGTATGAGGAAAATACAGCCATACTAAGATAAAGAAAATGTGTTTGTGGAGTGTAAACAGGAAAGATACTGCTCTTGGATGTGGTTAAATGAGATCACAAACAAACATACTATGTCCTCTATCCCTAGATGTGAAATGTCTTTAAAACACATGTATAAAGATTTGGCATATAATTATGGGCTACATTTACAGGTGTCAATAACAATGGTTTACCCCCTTTAActtctgggagagagggagggtcagatataggggggggggggtacagctCTAGCTCGGCAGTCTGGTGGCAGTGTCCCTAAGGCGGTCAGCTTCCTTTTCGAGGTCAGCGTCCCGTTGGCGGTCAGCGTCCCGTTGGCGGTAGTGGAACAGGCTGGTGGTGTCCAACTCGCTGGCATACTTTATGGCCTCAGCAAACAGCTTGACCACCTG
>TU318749
GGTGAATACTGCTTTTATTAGATTTGTATGTAGGCAGAATGCAGATGTTTAGAAAAGGGTGAGTACTTTGAAATGTAAGCTCATGTTATTTATAAACATGGACACACAAATACATGTAAAATACAACTAATCAGCTGTTAGGATCGTTAACTAAAATTGTCCCCAAAATAACTCAAAACTTTCAGatagttttttttaaaagacAGAAGCACTTTGGATACATTCATAACTTGATATCGGCCTCAAAATATCAAGAATGTAGAAGCTATCTCGAAGGGTGCCTAGTAaaacacactcaacacacacacactcaaccagtggtgtaaagtatttcagtaaaaatactttaaagtactacttaagaagTTTTtgttgggggtatctgtactttactttgctatttatattttCGACAAATTTTACTAcattttactacattcctaaagaaaataatgtacattttacctgacacccaaaagtactcgttacattttgaatgcttagtaggacaggaaaattgtcccaTTCAcggacttatcaagagaacacgtggtcatccctgctgcctctgatctggtggaatcACTAAACAAAATGCATATTTTcaaaatgatgtctgagtgttggagtgtgcccctggttatcTGTACATTTTTAATACAAGACAATGATGCCGTccgctttgcttaatataaggaatttgaaatgatttctacCTTAACTTTAGACACTtaagaaccaaatacttttagacttttacttaagGGGGGTGACTCACTtgtacttgagtaactttctaagTATCTAtagttttactcaagtatgacaattgggtacttttcccaacactgcactcaacacacacatacaatcctAGTTGGGTCCATAGCACCATCTTTAGTCCATAACCAAAATGCATGAATGCATGAAGCAGTAGTGTGGGTCACTGGCCAAACTGAGTCCTTTAATGTAGCAGGCATTACTACGTACAAATCACACCGTGCCGACCAACGGCTGAAAGCAGCGGCTGGCCGCGGTGGGATAGTTAAAGACGATCCGTGGTGAGTCAACATGTAGAGTCACTGGAACAGAAAATGATGCCCGGTGTTCTGGTCAGAGATAATAGGATGGCCACCCGCTGCTTTTAAAAGTTTGTCAGCAAGGTCTGTTTTAGACTTTAAAATGTTGAAGGCTTCTGAACTGGCGAACAACATATCAAAGGCGTTTTATGTGTTTTCAGTATGAGGAAAATACAGCCATACTAAGATAAAGAAAATGTGTTTGTGGAGTGTAAACAGGAAAGATACTGCTCTTGGATGTGGTTAAATGAGATCACAAACAAACATACTATGT
>TU318747
ACTAAAATTGTCCCCAAAATAACTCAAAACTTTCAGatagttttttttaaaagacAGAAGCACTTTGGATACATTCATAACTTGATATCGGCCTCAAAATATCAAGAATGTAGAAGCTATCTCGAAGGGTGCCTAGTAaaacacactcaacacacacacactcaaccagtggtgtaaagtatttcagtaaaaatactttaaagtactacttaagaagTTTTtgttgggggtatctgtactttactttgctatttatattttCGACAAATTTTACTAcattttactacattcctaaagaaaataatgtacattttacctgacacccaaaagtactcgttacattttgaatgcttagtaggacaggaaaattgtcccaTTCAcggacttatcaagagaacacgtggtcatccctgctgcctctgatctggtggaatcACTAAACAAAATGCATATTTTcaaaatgatgtctgagtgttggagtgtgcccctggttatcTGTACATTTTTAATACAAGACAATGATGCCGTccgctttgcttaatataaggaatttgaaatgatttctacCTTAACTTTAGACACTtaagaaccaaatacttttagacttttacttaagGGGGGTGACTCACTtgtacttgagtaactttctaagTATCTAtagttttactcaagtatgacaattgggtacttttcccaacactgcactcaacacacacatacaatcctAGTTGGGTCCATAGCACCATCTTTAGTCCATAACCAAAATGCATGAATGCATGAAGCAGTAGTGTGGGTCACTGGCCAAACTGAGTCCTTTAATGTAGCAGGCATTACTACGTACAAATCACACCGTGCCGACCAACGGCTGAAAGCAGCGGCTGGCCGCGGTGGGATAGTTAAAGACGATCCGTGGTGAGTCAACATGTAGAGTCACTGGAACAGAAAATGATGCCCGGTGTTCTGGTCAGAGATAATAGGATGGCCACCCGCTGCTTTTAAAAGTTTGTCAGCAAGGTCTGTTTTAGACTTTAAAATGTTGAAGGCTTCTGAACTGGCGAACAACATATCAAAGGCGTTTTATGTGTTTTCAGTATGAGGAAAATACAGCCATACTAAGATAAAGAAAATGTGTTTGTGGAGTGTAAACAGGAAAGATACTGCTCTTGGATGTGGTTAAATGAGATCACAAACAAACATACTATGT
>TU318750
ACTAAAATTGTCCCCAAAATAACTCAAAACTTTCAGatagttttttttaaaagacAGAAGCACTTTGGATACATTCATAACTTGATATCGGCCTCAAAATATCAAGAATGTAGAAGCTATCTCGAAGGGTGCCTAGTAaaacacactcaacacacacacactcaaccagtggtgtaaagtatttcagtaaaaatactttaaagtactacttaagaagTTTTtgttgggggtatctgtactttactttgctatttatattttCGACAAATTTTACTAcattttactacattcctaaagaaaataatgtacattttacctgacacccaaaagtactcgttacattttgaatgcttagtaggacaggaaaattgtcccaTTCAcggacttatcaagagaacacgtggtcatccctgctgcctctgatctggtggaatcACTAAACAAAATGCATATTTTcaaaatgatgtctgagtgttggagtgtgcccctggttatcTGTACATTTTTAATACAAGACAATGATGCCGTccgctttgcttaatataaggaatttgaaatgatttctacCTTAACTTTAGACACTtaagaaccaaatacttttagacttttacttaagGGGGGTGACTCACTtgtacttgagtaactttctaagTATCTAtagttttactcaagtatgacaattgggtacttttcccaacactgcactcaacacacacatacaatcctAGTTGGGTCCATAGCACCATCTTTAGTCCATAACCAAAATGCATGAATGCATGAAGCAGTAGTGTGGGTCACTGGCCAAACTGAGTCCTTTAATGTAGCAGGCATTACTACGTACAAATCACACCGTGCCGACCAACGGCTGAAAGCAGCGGCTGGCCGCGGTGGGATAGTTAAAGACGATCCGTGGTGAGTCAACATGTAGAGTCACTGGAACAGAAAATGATGCCCGGTGTTCTGGTCAGAGATAATAGGATGGCCACCCGCTGCTTTTAAAAGTTTGTCAGCAAGGTCTGTTTTAGACTTTAAAATGTTGAAGGCTTCTGAACTGGCGAACAACATATCAAAGGCGTTTTATGTGTTTTCAGTATGAGGAAAATACAGCCATACTAAGATAAAGAAAATGTGTTTGTGGAGTGTAAACAGGAAAGATACTGCTCTTGGATGTGGTTAAATGAGATCACAAACAAACATACTATGTCCTCTATCCCTAGATGTGAAATGTCTTTAAAACACATGTATAAAGATTTGGCATATAATTATGGGCTACATTTACAGGTGTCAATAACAATGGTTTACCCCCTTTAActtctgggagagagggagggtcagatataggggggggggggtacagctCTAGCTCGGCAGTCTGGTGGCAGTGTCCCTAAGGCGGTCAGCTTCCTTTTCGAGGTCAGCGTCCCGTTGGCGGTCAGCGTCCCGTTGGCGGTAGTGGAACAGGCTGGTGGTGTCCAACTCGCTGGCATACTTTATGGCCTCAGCAAACAGCTTGACCACCTG

Function

NR:

description
carbamoyl-phosphate synthase [ammonia], mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU318746 False 1670 lncRNA 0.40 1 60164479 60166148
TU318749 False 1353 lncRNA 0.37 1 60164479 60165831
TU318747 False 1204 lncRNA 0.38 1 60164628 60165831
TU318750 True 1521 lncRNA 0.41 1 60164628 60166148

Neighbor

gene id symbol gene type direction distance location
erbb4b LOC106586446 coding upstream 112185 59870559 ~ 60052294 (+)
ikzf2 LOC106586445 coding upstream 582523 59556678 ~ 59581956 (+)
LOC110505376 NA coding upstream 649418 59513445 ~ 59515061 (+)
LOC118944557 NA coding upstream 1070274 59093144 ~ 59094205 (+)
abca12 abca12 coding upstream 1099687 58961640 ~ 59064792 (+)
LOC110505381 NA coding downstream 101494 60267642 ~ 60269899 (+)
myl1 LOC100135947 coding downstream 111097 60277245 ~ 60286080 (+)
LOC118964303 NA coding downstream 216526 60382674 ~ 60383352 (+)
tgfbr2l LOC106586454 coding downstream 468391 60634539 ~ 60654313 (+)
LOC110520315 ube2e3 coding downstream 1165211 61331359 ~ 61370875 (+)
G281047 NA non-coding upstream 6361 60157806 ~ 60158118 (+)
G281024 NA non-coding upstream 37453 60126801 ~ 60127026 (+)
G280995 NA non-coding upstream 63324 60100776 ~ 60101155 (+)
G280994 NA non-coding upstream 64067 60100196 ~ 60100412 (+)
G280977 NA non-coding upstream 76109 60088164 ~ 60088370 (+)
G281054 NA non-coding downstream 2091 60168239 ~ 60168442 (+)
G281082 NA non-coding downstream 49736 60215884 ~ 60216112 (+)
G281128 NA non-coding downstream 96220 60262368 ~ 60262582 (+)
G281141 NA non-coding downstream 121240 60287388 ~ 60303967 (+)
G281142 NA non-coding downstream 124534 60290682 ~ 60292657 (+)
G280315 NA other upstream 110062 60052716 ~ 60054417 (+)
G277973 NA other upstream 2374147 57789734 ~ 57790332 (+)
G277296 NA other upstream 2899587 57264567 ~ 57264892 (+)
G275553 LOC107595854 other upstream 4248346 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 4263736 55900194 ~ 55900743 (+)
G281591 LOC106586456 other downstream 574091 60740239 ~ 60757350 (+)
G281714 NA other downstream 725376 60891524 ~ 60893778 (+)
G281996 NA other downstream 867618 61033766 ~ 61037105 (+)
G282707 il-1rii other downstream 1791240 61957388 ~ 61964066 (+)

Expression


Co-expression Network