G281221


Basic Information

Item Value
gene id G281221
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60164508 ~ 60165905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU318939
TAAATGTAGCCCATAATTATATGCCAAATCTTTATACATGTGTTTTAAAGACATTTCACATCTAGGGATAGAGGACATAGTATGTTTGTTTGTGATCTCATTTAACCACATCCAAGAGCAGTATCTTTCCTGTTTACACTCCACAAACACATTTTCTTTATCTTAGTATGGCTGTATTTTCCTCATACTGAAAACACATAAAACGCCTTTGATATGTTGTTCGCCAGTTCAGAAGCCTTCAACATTTTAAAGTCTAAAACAGACCTTGCTGACAAACTTTTAAAAGCAGCGGGTGGCCATCCTATTATCTCTGACCAGAACACCGGGCATCATTTTCTGTTCCAGTGACTCTACATGTTGACTCACCACGGATCGTCTTTAACTATCCCACCGCGGCCAGCCGCTGCTTTCAGCCGTTGGTCGGCACGGTGTGATTTGTACGTAGTAATGCCTGCTACATTAAAGGACTCAGTTTGGCCAGTGACCCACACTACTGCTTCATGCATTCATGCATTTTGGTTATGGACTAAAGATGGTGCTATGGACCCAACTaggattgtatgtgtgtgttgagtgcagtgttgggaaaagtacccaattgtcatacttgagtaaaactaTAGATActtagaaagttactcaagtacaAGTGAGTCACCCCCcttaagtaaaagtctaaaagtatttggttcttaAGTGTCTAAAGTTAAGgtagaaatcatttcaaattccttatattaagcaaagcggACGGCATCATTGTCTTGTATTAAAAATGTACAgataaccaggggcacactccaacactcagacatcattttgAAAATATGCATTTTGTTTAGTgattccaccagatcagaggcagcagggatgaccacgtgttctcttgataagtccgTGAAtgggacaattttcctgtcctactaagcattcaaaatgtaacgagtacttttgggtgtcaggtaaaatgtacattattttctttaggaatgtagtaaaatgTAGTAAAATTTGTCGaaaatataaatagcaaagtaaagtacagatacccccaacaAAAActtcttaagtagtactttaaagtatttttactgaaatactttacaccactggttgagtgtgtgtgtgttgagtgtgtttTACTAGGCACCCTTCGAGATAGCTTCTACATTCTTGATATTTTGAGGCCGATATCAAGTTATGAATGTATCCAAAGTGCTTCTgtcttttaaaaaaaactatCTGAAAGTTTTGAGTTATTTTGGGGACAATTTTAGTTAACGATCCTAACAGCTGATTAGTTGTATTTTACATGTATTTGTGTGTCCATGTTTATAAATAACATGAGCTTACATTTCAAAGTACTCACCCTTTTCTAAACATCTGCATTCTGCCTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU318939 True 1398 lncRNA 0.37 1 60164508 60165905

Neighbor

gene id symbol gene type direction distance location
vwc2l LOC106586444 coding downstream 1019672 59115416 ~ 59144836 (-)
LOC110520290 myo1b coding downstream 1232254 58775631 ~ 58932254 (-)
LOC110520289 LOC106586438 coding downstream 1389880 58766427 ~ 58774628 (-)
LOC110520288 LOC106586437 coding downstream 1402667 58743901 ~ 58761841 (-)
LOC118964362 NA coding downstream 1661809 58502557 ~ 58502699 (-)
cps1 cps1 coding upstream 73 60165978 ~ 60253769 (-)
map2 LOC106586448 coding upstream 126498 60292403 ~ 60416303 (-)
kansl1l NA coding upstream 255736 60421641 ~ 60463431 (-)
LOC118944680 tas2r8 coding upstream 331669 60497574 ~ 60523192 (-)
heg1 LOC106586449 coding upstream 379199 60545104 ~ 60560296 (-)
G281250 NA non-coding downstream 973 60163330 ~ 60163535 (-)
G281242 NA non-coding downstream 8115 60156052 ~ 60156393 (-)
G281227 NA non-coding downstream 40200 60124105 ~ 60124308 (-)
G281005 NA non-coding downstream 56863 60107183 ~ 60107645 (-)
G280986 NA non-coding downstream 69635 60094615 ~ 60094873 (-)
G281257 NA non-coding upstream 11789 60177694 ~ 60178104 (-)
G281272 NA non-coding upstream 45919 60211824 ~ 60212085 (-)
G281299 NA non-coding upstream 92771 60258676 ~ 60259024 (-)
G281320 NA non-coding upstream 111420 60277325 ~ 60298773 (-)
G281303 NA non-coding upstream 121483 60287388 ~ 60303967 (-)
G277749 LOC106586429 other downstream 2575325 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 2760933 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 2866746 57270782 ~ 57297762 (-)
G275250 NA other downstream 4753021 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 5045296 55068639 ~ 55122013 (-)
G284018 NA other upstream 2548670 62714575 ~ 62715177 (-)
G286522 NA other upstream 4803644 64969549 ~ 64970755 (-)
G286580 marco other upstream 4848354 65014259 ~ 65029736 (-)
G286638 NA other upstream 4888795 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 5069275 65235180 ~ 65235908 (-)

Expression


Co-expression Network