G281509


Basic Information

Item Value
gene id G281509
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60589657 ~ 60593889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU319256
tatataaaacagATCACTCAAATGGACAACTTAAAAGACTGCAAATCAACATCTGGCTTTTGATCAACCACCTGTGAAATTGAATAATTCAATACTTTATCATAACTTGACTAACAAATGTTTTTTTAGGCTTCCTTTAGTTCAATGATCCAGTATGAAAATCAAAATAACTCGGTCTCAAAAGGAAGAAGATTTTGTCCTCAATTGCCCAAGCTCAACATATTCACAATCAAACAATTATCTAATATTAACTGAGAACTGActgcaataatgactgtatatgACTTACATACTTCAGAAGAACCTTTTTACAAGTGACACAATGCATTTTCAAAAATAGAACAAAATATTTGTCAAAATATTTTAACtttgatattcccccccccccccccccccccccacattgatGAAACAAGTTTCATTTTTCACCAGCTTATACAAGGACACTTACGGTCAGTTTATGTATAGGGGGTTACTGTGGTGGAACTGTCCCAAAAATTGGTTGCTTTTTTTCACAAAGATAAACAGAAATATGTTCAGTTCCCTCTGTATGGGGTTGAAGGTGCTGCTTTTGGGGTCTAAAACTTATATTATAGGTattatatacacagagtatacaaaacattaggaatacctgctctttccatgacatagactgaccaggtgaatgctttgatctcttattgatgtcacctgttacatGCACTTCAACTGTGGGAAGGACtggtgtcaacatgggccagcacccctgtggaacgcttgacaccttgtagtctTTGCCCTGTCGAATTGAGGCTGATGAGggcaaatgttttgtacactgtctctctaaggctgtgtttacacaggcagcccaattctgatcttctgCCCAATTATGTGCAATAGAGCAGATTTGATTGATCAAAATACCAACTGGTAGAAAAATAGAGTTGGGATGCCTGTGTATACGCAGTCTTAGATAGTCATGGAGAAATACACGCTGTGCTTTTGAAAGTGCTTTCTTTCCCTGGTGTACAGTAGGTCTCATTGAACACTAAAACCATACAATCAGATGACAATTTGACACAAAATGAAAATCGTTTTGGAACCACCTAATGATTGATTAATTTAACATGTCAACATTTCAGCTATATGCCACATGACAATGAATAATAATTTTATTAATTTAGGAGGATGATAATCCAGGTATTCTTCAAACTGACAGTCCAGTCCACAATACTGTAACTACTAGTTCATGTAAGGATGGGTGGACTTCATTACTGCAGGTCAAATCATAGCTGTGGTCCAATGCTATCCAAATCACTACTGAGAGAAATTCAAAAAATGGGTGGCAAAAAGCTATGGTTTCACAGAACATGAAGTAGCTGTGTATTGACAAACAATAAATTGCATTGGCAACCTAATGAAAAGAAAGACCTTCCATAAAACATTATAGACCAGTCTCCAGTCATGTAGCTATTACACCAGGTTGTCCAGAACAGAAAATACACAACTTACTTATAGCAGAGAGACCAACTTTCTATACATTGTACAGAGGGAATGTTTACAGAGCAAAGTTTCGTAGCTGTTGAATCCAGAACAAGGGTATTGTAACACCTAACATTAAATCTAATCTCTTAACCTATTGTAGAAATGTAACAAGTTAGAGAAGCTAGCATTTCATGTAAAACAATGTTGACAAGATTGATTTAATAGCTAGCATGTTAACTAAACAATTTAACTTTAAAAGACACATTAACAATAAAGCACAAAGGAGAGACATCATGCAAGACAAAAATGACTAAGGCAATATAAAAAGAATACTCAAATCAATTTGTCAAGGTACATTTCAAATGTGGCCGTTGTGTTTCGCTTCACATGCAACAATTATTCTGATTCAATATATACCATAGAAACCATTTTATGTAACCTCTGCCTTACTATTCAGAAAGTTATGCATTGTAATATCTATAAAGAAATAGAAAAtgtcattaaaatgtaattttgcAAGTCAAAGCTTGATGTTCAGAGCTTTATGGGGCACTAAAAGCCATCCTAACAATTTTACCAAGGTGAGAAACACAGAGAAACGCCTAATAATAAATATACCAGTATATTGCAAAATTAAGTTTGATTTAAAATATCTGTGCCATGAAGGTAGGAAATCAGAAGCGATGCCAGTGGTCAGTCTTTGCTGAAATACCAAGAGGGCTAAAATGTGTGAAAGGGAAGCGCTTATAAAAGGAGGGGAAAGTTGCACTTCCACTTAAAAATAAAGTAACCATTAACCTTGAATTGTATGTTTCAGAAAGTCCAGATGGAGCAGTAGTTTGACTTGACAGTCACCAAGAATGACTATCAACCATACGGTGGAAGCTAGAAATACTTCAAAAAGCACAGAACTAAtaaaatatacagttgatgtcggaagtttacatacacttagttgactgtgcctttaaacagcttagaaaactccagaaaatcatgtcatggctttataagcttctgatatgctaattgacataatttgagtcaattgaaggtgtacctgtggaagtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaaatcagccaagacctcagaaaataaattgtagacctccacaagcctggtttatccttgggagcaatttccaaacgcctgaaggtaccacgttcaactgtacaaacaacagtacgcaagtacacacaccatgggaccacacagccgttataccgctcagaaaagagacacgttctgtctcctagagatgaacgtactttggtgtgataaatgcaaatcaatcccagaacagcagcaaaggaccttgtgaatatgctggaggaaacaggtacaaaagtatctatatacacagtaaaacaagtcctatatcgacgtaacctgaaaggccgctcagcaagaaaactgtcataaaaaagccagactatggtttgagactgcacatggggacaaatatcgtactttttggataaatgtcctctggtctgatgaaataataatagaactgtttggccataatgaccatcgttatgttctgaggaaaaagggggatgcttgcaagccgaagaacatcatccgaaccgtgaagcacgggggtggcagcatcatgttttgggggtgctttgctgcaggagggactggtgcacttcacaaaatagatgacatcataaggaaaggaaaattatgtggatatattgaagcatcagtcaggaagttaatgcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattgggagtggccatcacaaagccctgacctcaatcctatagaaaatttgtgggcagaagtgaaaaagtgtgtgcgagcaaggaggcctacaaacctgactcagttacaccagctctgtcaggaggaatgggccaaaatccacccaacttattgtgggaagcttgtggaaggctacctgaaacatttgacccaagttaaacgatttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaataaaagctgaaataaatccctctctactattattctgacatttcacatccttaaaataaagtggtgatcctaactgacctaagatagggaatttttactctgattaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttccgacttcaactgtattttccaGGACAGGATCCTAAATAAAATGGAGCAATCGTTTGAATCTCTTACAGCTACATGTGTTAATGTACGATATAAAGTAGTGCTGAATGGGCAATTATCTTACAATGACTGACATACATTCTCCCATAATGAAATGTGTTTCGTCCTGTGGTCTTAACCTTGTACTGGAAAACCGGCCCGAAGAGTACCAACCCTCAGAGAATTTCAGGTATCCTATGACTGTTTAGATTAATACATAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU319256 True 4054 lncRNA 0.38 2 60589657 60593889

Neighbor

gene id symbol gene type direction distance location
LOC118964303 NA coding upstream 206305 60382674 ~ 60383352 (+)
myl1 LOC100135947 coding upstream 303577 60277245 ~ 60286080 (+)
LOC110505381 NA coding upstream 319758 60267642 ~ 60269899 (+)
erbb4b LOC106586446 coding upstream 537363 59870559 ~ 60052294 (+)
ikzf2 LOC106586445 coding upstream 1007701 59556678 ~ 59581956 (+)
tgfbr2l LOC106586454 coding downstream 40650 60634539 ~ 60654313 (+)
LOC110520315 ube2e3 coding downstream 737470 61331359 ~ 61370875 (+)
LOC110520316 itga4 coding downstream 881987 61475876 ~ 61505428 (+)
LOC110504376 LOC106586465 coding downstream 996169 61590058 ~ 61647253 (+)
LOC110520321 LOC106586467 coding downstream 1054816 61648705 ~ 61663408 (+)
G281474 NA non-coding upstream 46915 60542421 ~ 60542742 (+)
G281461 NA non-coding upstream 62828 60526530 ~ 60526829 (+)
G281219 NA non-coding upstream 174472 60414961 ~ 60415185 (+)
G281212 NA non-coding upstream 183133 60406298 ~ 60406524 (+)
G281203 NA non-coding upstream 197288 60392121 ~ 60392369 (+)
G281512 NA non-coding downstream 4921 60598810 ~ 60599890 (+)
G281515 NA non-coding downstream 9114 60603003 ~ 60603289 (+)
G281517 NA non-coding downstream 11810 60605699 ~ 60606292 (+)
G281525 NA non-coding downstream 21703 60615592 ~ 60615814 (+)
G281492 snx4 non-coding downstream 25183 60619072 ~ 60621633 (+)
G281141 NA other upstream 299090 60287388 ~ 60303967 (+)
G280315 NA other upstream 535240 60052716 ~ 60054417 (+)
G277973 NA other upstream 2799325 57789734 ~ 57790332 (+)
G277296 NA other upstream 3324765 57264567 ~ 57264892 (+)
G275553 LOC107595854 other upstream 4673524 55915329 ~ 55916133 (+)
G281591 LOC106586456 other downstream 146350 60740239 ~ 60757350 (+)
G281714 NA other downstream 297635 60891524 ~ 60893778 (+)
G281996 NA other downstream 439877 61033766 ~ 61037105 (+)
G282707 il-1rii other downstream 1363499 61957388 ~ 61964066 (+)
LOC110520339 lrrc63 other downstream 1599715 62193287 ~ 62200069 (+)

Expression


Co-expression Network