G281492 (snx4)


Basic Information

Item Value
gene id G281492
gene name snx4
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60619072 ~ 60621633 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU319238
CTAGAATTCTTCCTATTTATTAGTGTATTTTTGGCACAATGATTACAACCTTACAACCGCATAAACAGTGCAATTTCCTGCCAGAGCGCTCTGATCTCATCCCAAATTCACGATTAACATTGCACCTCCTCCCCTAGCCCTTAGAGTGAACAGAGATGCAAGAGGCCAGGGGTTGTGTCccaaattgcacccTTTCCTATTAGACCAAGGCCcttagtgctctggtcaaaagtaatgcactatatagagcATAGGTAGTCATTTGGGCTGCATCCCCAGTACACGCACAACACTACCATAAGTAAATTATCACATCCTGTCTTTCCTGTGTGACCTTCCTGTTCCTTTGGCTAGATTTATCAAAACACTGACCCACCCACTCTTCAGAAATGACAAGCCTGCCATTCATCATAGTGGTTACTTAAGGCCAAGTGCCTGAGTATGTTTTGAATGGCAAAGTACAGTAAGCCATTTAAATAGGATGGTTACATTCTTAATGTTGTACAAAAACATCTGAAAAGGTTGAACACCTTATTTTAGTATACTGGGACAATGCACTGAGAGGGTAGAAAAGACAAAGGTCAATATACCAACCACAAGTATAAAATTGACGAAAACAAGTGAATTATGCATGTAAAATAAACGGCAAGCACATTCTTATAGGACTAGTCTAATTGCCTCCTGCctccattgtaaataataatttgttaattGACATGCATGGTTAAAGGttcaataacaaaaaaatctaaataacagTTGTAATCTTATGTAGAGTTGCAAAATTCTTGGAACTGTCAATAAATTCTCTGGTTTTCCATTAATCCTGGTTTGAGAATTCCGGATTTCCTGCTTGTTCCCCTCCTGATTCTTGGAATCCTCCAGCCCGGATTTttgggaaaaccagggaattcaTAGAAAATATGCAAGACTAATCTTATGACGTGATTTTGAACATTGTGTAAAAGGCAGAATAGGAAAATTGGATTCAGTCCACATTTCTTGGCATCTCTATAAACAAATTAATATAAGTGCTTGGTGAATAACCTTAAATCAGCATTTAGGCGAAAATACATTTGtatgaaaaaacacatttgtCAGACAGTCACTGAGAAATAACTGCAATTGCAAGTCGATCAAATCAAGGCAGCTAGCAATCGGACATGATAAAGATATAGAAAAATAATTCTTATTTATTTGTTCTTGAGCGTACAGGATCAATGTTGCCATAAGGATCATAGGGACTGTGTCCAGGAATCTGTCCCAAaaagcaccctgttccctatatagtgaacagaccccacagggctctggtcaaaagtagcacactatttagggaatagagtgcaatttgggatgcatccccAGGAGGAGTCCCCTGAAAAGAAGCATGTTCTGTTTTGCTGTTTGTTTGGAGGGCCTGTTTCGGCCCTGAAGATCACATCTTGTTGAAACACTCCTTTGCGTTGGTCCACACTTGTattccctTTTTTACACCTGCTGATCTGCATGATTGCATAGCTAATCAGGGCCTCCTTCAGGTCCCGGTCCTTTTGGTCTTTAAAGTGCTCAATGTCTATCCAGGCAGTCTTCACAAACTCACTgcggagagagaaagactggcTTTATAACCTT
>TU319239
CTAGAATTCTTCCTATTTATTAGTGTATTTTTGGCACAATGATTACAACCTTACAACCGCATAAACAGTGCAATTTCCTGCCAGAGCGCTCTGATCTCATCCCAAATTCACGATTAACATTGCACCTCCTCCCCTAGCCCTTAGAGTGAACAGAGATGCAAGAGGCCAGGGGTTGTGTCccaaattgcacccTTTCCTATTAGACCAAGGCCcttagtgctctggtcaaaagtaatgcactatatagagcATAGGTAGTCATTTGGGCTGCATCCCCAGTACACGCACAACACTACCATAAGTAAATTATCACATCCTGTCTTTCCTGTGTGACCTTCCTGTTCCTTTGGCTAGATTTATCAAAACACTGACCCACCCACTCTTCAGAAATGACAAGCCTGCCATTCATCATAGTGGTTACTTAAGGCCAAGTGCCTGAGTATGTTTTGAATGGCAAAGTACAGTAAGCCATTTAAATAGGATGGTTACATTCTTAATGTTGTACAAAAACATCTGAAAAGGTTGAACACCTTATTTTAGTATACTGGGACAATGCACTGAGAGGGTAGAAAAGACAAAGGTCAATATACCAACCACAAGTATAAAATTGACGAAAACAAGTGAATTATGCATGTAAAATAAACGGCAAGCACATTCTTATAGGACTAGTCTAATTGCCTCCTGCctccattgtaaataataatttgttaattGACATGCATGGTTAAAGGttcaataacaaaaaaatctaaataacagTTGTAATCTTATGTAGAGTTGCAAAATTCTTGGAACTGTCAATAAATTCTCTGGTTTTCCATTAATCCTGGTTTGAGAATTCCGGATTTCCTGCTTGTTCCCCTCCTGATTCTTGGAATCCTCCAGCCCGGATTTttgggaaaaccagggaattcaTAGAAAATATGCAAGACTAATCTTATGACGTGATTTTGAACATTGTGTAAAAGGCAGAATAGGAAAATTGGATTCAGTCCACATTTCTTGGCATCTCTATAAACAAATTAATATAAGTGCTTGGTGAATAACCTTAAATCAGCATTTAGGCGAAAATACATTTGtatgaaaaaacacatttgtCAGACAGTCACTGAGAAATAACTGCAATTGCAAGTCGATCAAATCAAGGCAGCTAGCAATCGGACATGATAAAGATATAGAAAAATAATTCTTATTTATTTGTTCTTGAGCGTACAGGATCAATGTTGCCATAAGGATCATAGGGACTGTGTCCAGGAATCTGTCCCAAaaagcaccctgttccctatatagtgaacagaccccacagggctctggtcaaaagtagcacactatttagggaatagagtgcaatttgggatgcatccccAGGAGGAGTCCCCTGAAAAGAAGCATGTTCTGTTTTGCTGTTTGTTTGGAGGGCCTGTTTCGGCCCTGAAGATCACATCTTGTTGAAACACTCCTTTGCGTTGGTCCACACTTGTattccCTTTTTACACCTGCTGATCTGCATGATTGCATAGCTAATCAGGGCCTCCTTCAGGTCCCGGTCCTTTTGGTCTTTAAAGTGCTCAATGTCTATCCAGGCAGTCTTCACAAACTCATCGCTCTCGGTGTTCTTCTCTttcacagcctcctctccctcctctatctgcTGTTCTAACACTTGTAACTTAGCCTCCCTCTGCTCTGCAGTCTCCTGGCCAAACAGCTTACTGGTCATCCCCTTCAGTGAGAACGTCCGCACAGTCTGAACACAGGGAAGGAAAGCTCAACATTCCATCTGGTCATTCTTTAAGGTTTGGATAAGCTTCACAGCAACTTTtgactaaatgtattttatttatgtgCTTGCTATCTATTGCCTCATTATTTGCTGAGGAGCTCCATGTGTCTCTTTAGAAACTGAGGctatgtccaaaatggcaccctatg

Function

symbol description
snx4 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport. Is expressed in notochord. Orthologous to human SNX4 (sorting nexin 4).

NR:

description
sorting nexin-4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU319238 False 1635 lncRNA 0.40 3 60619072 60621130
TU319239 True 1932 lncRNA 0.41 4 60619072 60621633

Neighbor

gene id symbol gene type direction distance location
LOC118964303 NA coding upstream 235720 60382674 ~ 60383352 (+)
myl1 LOC100135947 coding upstream 332992 60277245 ~ 60286080 (+)
LOC110505381 NA coding upstream 349173 60267642 ~ 60269899 (+)
erbb4b LOC106586446 coding upstream 566778 59870559 ~ 60052294 (+)
ikzf2 LOC106586445 coding upstream 1037116 59556678 ~ 59581956 (+)
tgfbr2l LOC106586454 coding downstream 12906 60634539 ~ 60654313 (+)
LOC110520315 ube2e3 coding downstream 709726 61331359 ~ 61370875 (+)
LOC110520316 itga4 coding downstream 854243 61475876 ~ 61505428 (+)
LOC110504376 LOC106586465 coding downstream 968425 61590058 ~ 61647253 (+)
LOC110520321 LOC106586467 coding downstream 1027072 61648705 ~ 61663408 (+)
G281525 NA non-coding upstream 3258 60615592 ~ 60615814 (+)
G281517 NA non-coding upstream 12780 60605699 ~ 60606292 (+)
G281515 NA non-coding upstream 15783 60603003 ~ 60603289 (+)
G281512 NA non-coding upstream 19182 60598810 ~ 60599890 (+)
G281509 NA non-coding upstream 25183 60589657 ~ 60593889 (+)
G281538 NA non-coding downstream 12451 60634084 ~ 60634379 (+)
G281579 LOC106586456 non-coding downstream 101949 60723582 ~ 60727146 (+)
G281680 NA non-coding downstream 227549 60849182 ~ 60923455 (+)
G281754 NA non-coding downstream 331507 60953140 ~ 60955335 (+)
G281957 NA non-coding downstream 344695 60966328 ~ 60966638 (+)
G281141 NA other upstream 328505 60287388 ~ 60303967 (+)
G280315 NA other upstream 564655 60052716 ~ 60054417 (+)
G277973 NA other upstream 2828740 57789734 ~ 57790332 (+)
G277296 NA other upstream 3354180 57264567 ~ 57264892 (+)
G275553 LOC107595854 other upstream 4702939 55915329 ~ 55916133 (+)
G281591 LOC106586456 other downstream 118606 60740239 ~ 60757350 (+)
G281714 NA other downstream 269891 60891524 ~ 60893778 (+)
G281996 NA other downstream 412133 61033766 ~ 61037105 (+)
G282707 il-1rii other downstream 1335755 61957388 ~ 61964066 (+)
LOC110520339 lrrc63 other downstream 1571971 62193287 ~ 62200069 (+)

Expression


Co-expression Network