G281714


Basic Information

Item Value
gene id G281714
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60891524 ~ 60893778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU319499
TTTTAGATATCAGAAGCATTACTTTATTTGAAAGACATTGATATTTAAGGGGACTTGGCTAACACAATTTACCATCATATCTCAAAGATTGAGACTTTTATAGGAAGggcatacagtgctttcagaaagtattcagaccctttcccatttcccacatttgttacgttacagccttattctgaaatagattaaacatgttttccctcgtcaatctacacacaataccccataatgacaaagcgaaaacaggtttttagacatttttgcacatttatacaatttaaaaacagaaataccttatttacataagtattcaaaccctttgctatgagactcgaaattgagctctggtgcatccagtttccattgatcatccttgagatgtttctccaacttgattggagtccacctgtggaaaattaaattgattggacataatctggaaaggctcacacctgactacataaggtcccacagttgacagtgaatgtcagagcaaaaaccaagctatgaggttgaaggaattgtccgtagagctgcaaggactggggcgaaggtccaccatccaacagaacaacgaccctaagcacacagacaagacaacgcaagagtggcttcagaacaagtggctgaatgtccttaagtggcccagccatagcccagacttgaacccgatcaaacatctctggagagacctgaaaatagctgtgcagcgacgctccctatccaacctgacagagcatgagaggatctgcagagaagaattggagaaactccccaaatacagatgtgccaagcttgtagcatcatacccaagaagactccaggctgtgatcgctgccaaaggttcttcaacaaagtactgaacaaagggtctgaatacttatgtaaatgtgataattcagttttttaattttttggggggtgcaaaaatgtctaaaaacctgtttttgctttgtcattatggggtattgtgtgtacaatgatgatgaaaaaaactaaatgtgaaataaagtcaaggggtcttaataGTTTGCGAATGCACTGTAATACAGTATTGAAACTGAAGAAATTGCTAAATTACTGTTTTTAGCATTTATTAATAAATATACCGTATTCTCTCATTAATTGTAGGACATTTGGTCATAGAGGCACAGAATCAAATGCGCTAACTTAGATAAAAAGCAGATAAAATATAAGTATAATATTAAGGATATTTTGACTGAAGTTGAGATATAATTTGGTTTTATGCACAAATTAAACAATTGTCTAAACTACAAATAAATTAAGCTCACATTCATACACACAGTTGGTGTTTTGGGTGTAGTATGTAAGTGGTTATTGGGATCAGGTTCAGAAGTGACACCTCAGGCAGCCTTACAGATTTCACAGTTAAAATGAGGGTTATCCAGTGTACTACTGTGCAACATCAACACTACTTTCCATTACAGTGAGAGTGGAAAAGGGTCTGGCAGTGAAAAGCTTGATATAATATTTTGTATTACTTCATAACAGCAATGAGTACAGGAGGTACAGGAGAAGACACAGAGTACCAAAACAAGTGTGCCAGTCCAGCTTGAGAAGAGCGTAGTCGGGTTCGGGACAGCTGTTGTTACGTGCTTTCACCTGAAGAGCGGCACTAGAGGACAGGGTGCCGCTTGGGTTGACGGCCCGGCACGCATAGAGGCCTGCGTCGGTCTCAGTGACCTTCTGTACGAACAATGCATGTTTGCCTTTTTTTTGTGACAGCTCTATGTGCTCATCATTGGTCAGTTTCTCTCCATTCTTGAACCTGAAGCAAGAAGTGAATTATAACACAAAACACAATCACAACACAAGAAAGACACAAATCACATTCCTATTTATCAGAGGGTGAGCTGA
>TU319500
TTTTAGATATCAGAAGCATTACTTTATTTGAAAGACATTGATATTTAAGGGGACTTGGCTAACACAATTTACCATCATATCTCAAAGATTGAGACTTTTATAGGAAGggcatacagtgctttcagaaagtattcagaccctttcccatttcccacatttgttacgttacagccttattctgaaatagattaaacatgttttccctcgtcaatctacacacaataccccataatgacaaagcgaaaacaggtttttagacatttttgcacatttatacaatttaaaaacagaaataccttatttacataagtattcaaaccctttgctatgagactcgaaattgagctctggtgcatccagtttccattgatcatccttgagatgtttctccaacttgattggagtccacctgtggaaaattaaattgattggacataatctggaaaggctcacacctgactacataaggtcccacagttgacagtgaatgtcagagcaaaaaccaagctatgaggttgaaggaattgtccgtagagctctgagacaggtttagcttgaggcacagatttggggaagagtaccaaaacatttctgcagcattgaacacagtggcctcaatcattcttaaatggaagaagtttggtgcagcactgcaccaatcaggcctttatggtagagtggacggACAGAAGCCAGTcttcattaaaaggcacatgacagcccgcttggagtttgccaaaaggcacctaaaggactgtcagaccatgagaaataagattctctgggtctgatgaaaccaagattgaactctttggcctgaatgccaagcgtcacgtctggaggaaacctggcaccatccctaagttGAAGAATGGTCATGGCAGCATTGTTCTGTAggggtgtttttcagctgcaaggactggggcgaaggtccaccatccaacagaacaacgaccctaagcacacagacaagacaacgcaagagtggcttcagaacaagtggctgaatgtccttaagtggcccagccatagcccagacttgaacccgatcaaacatctctggagagacctgaaaatagctgtgcagcgacgctccctatccaacctgacagagcatgagaggatctgcagagaagaattggagaaactccccaaatacagatgtgccaagcttgtagcatcatacccaagaagactccaggctgtgatcgctgccaaaggttcttcaacaaagtactgatgtaaatgtgataattcagttttttaattttttggggggtgcaaaaatgtctaaaaacctgtttttgctttgtcattatggggtattgtgtgtacaatgatgatgaaaaaaactaaatgtgaaataaagtcaaggggtcttaataGTTTGCGAATGCACTGTAATACAGTATTGAAACTGAAGAAATTGCTAAATTACTGTTTTTAGCATTTATTAATAAATATACCGTATTCTCTCATTAATTGTAGGACATTTGGTCATAGAGGCACAGAATCAAATGCGCTAACTTAGATAAAAAGCAGATAAAATATAAGTATAATATTAAGGATATTTTGACTGAAGTTGAGATATAATTTGGTTTTATGCACAAATTAAACAATTGTCTAAACTACAAATAAATTAAGCTCACATTCATACACACAGTTGGTGTTTTGGGTGTAGTATGTAAGTGGTTATTGGGATCAGGTTCAGAAGTGACACCTCAGGCAGCCTTACAGATTTCACAGTTAAAATGAGGGTTATCCAGTGTACTACTGTGCAACATCAACACTACTTTCCATTACAGTGAGAGTGGAAAAGGGTCTGGCAGTGAAAAGCTTGATATAATATTTTGTATTACTTCATAACAGCAATGAGTACAGGAGGTACAGGAGAAGACACAGAGTACCAAAACAAGTGTGCCAGTCCAGCTTGAGAAGAGCGTAGTCGGGTTCGGGACAGCTGTTGTTACGTGCTTTCACCTGAAGAGCGGCACTAGAGGACAGGGTGCCGCTTGGGTTGACGGCCCGGCACGCATAGAGGCCTGCGTCGGTCTCAGTGACCTTCTGTACGAACAATGCATGTTTGCCTTTTTTTTGTGACAGCTCTATGTGCTCATCATTGGTCAGTTTCTCTCCATTCTTGAACCTGAAGCAAGAAGTGAATTATAACACAAAACACAATCACAACACAAGAAAGACACAAATCACATTCCTATTTATCAGAGGGTGAGCTGA

Function

NR:

description
TC1-like transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU319499 False 1881 TUCP 0.40 2 60891524 60893778
TU319500 True 2235 TUCP 0.41 2 60891524 60893778

Neighbor

gene id symbol gene type direction distance location
tgfbr2l LOC106586454 coding upstream 237211 60634539 ~ 60654313 (+)
LOC118964303 NA coding upstream 508172 60382674 ~ 60383352 (+)
myl1 LOC100135947 coding upstream 605444 60277245 ~ 60286080 (+)
LOC110505381 NA coding upstream 621625 60267642 ~ 60269899 (+)
erbb4b LOC106586446 coding upstream 839230 59870559 ~ 60052294 (+)
LOC110520315 ube2e3 coding downstream 437581 61331359 ~ 61370875 (+)
LOC110520316 itga4 coding downstream 582098 61475876 ~ 61505428 (+)
LOC110504376 LOC106586465 coding downstream 696280 61590058 ~ 61647253 (+)
LOC110520321 LOC106586467 coding downstream 754927 61648705 ~ 61663408 (+)
LOC110520324 LOC106586470 coding downstream 879655 61773433 ~ 61832413 (+)
G281579 LOC106586456 non-coding upstream 164378 60723582 ~ 60727146 (+)
G281538 NA non-coding upstream 257145 60634084 ~ 60634379 (+)
G281492 snx4 non-coding upstream 269891 60619072 ~ 60621633 (+)
G281525 NA non-coding upstream 275710 60615592 ~ 60615814 (+)
G281517 NA non-coding upstream 285232 60605699 ~ 60606292 (+)
G281754 NA non-coding downstream 59362 60953140 ~ 60955335 (+)
G281957 NA non-coding downstream 72550 60966328 ~ 60966638 (+)
G281958 LOC105896813 non-coding downstream 73791 60967569 ~ 61023059 (+)
G281970 NA non-coding downstream 92760 60986538 ~ 60987139 (+)
G281976 NA non-coding downstream 98128 60991906 ~ 61027640 (+)
G281591 LOC106586456 other upstream 134174 60740239 ~ 60757350 (+)
G281141 NA other upstream 600957 60287388 ~ 60303967 (+)
G280315 NA other upstream 837107 60052716 ~ 60054417 (+)
G277973 NA other upstream 3101192 57789734 ~ 57790332 (+)
G277296 NA other upstream 3626632 57264567 ~ 57264892 (+)
G281996 NA other downstream 139988 61033766 ~ 61037105 (+)
G282707 il-1rii other downstream 1063610 61957388 ~ 61964066 (+)
LOC110520339 lrrc63 other downstream 1299826 62193287 ~ 62200069 (+)
LOC110520346 htr2a other downstream 1473836 62367489 ~ 62408857 (+)
LOC110504398 LOC106586506 other downstream 1812553 62705451 ~ 62712740 (+)

Expression


Co-expression Network