G281970


Basic Information

Item Value
gene id G281970
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60986538 ~ 60987139 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU319795
TGCActtttggcttgcttgtatgacatcaatgcgatatttattataatcctcaacgtatcatctttcaaaatacacaGAGTCCTCGTAATTTACAGCCTTTCCCTCACAAAAATGTGAAAACGTTGCCCAATTAGCGGGAGGGATGAGGGCAGCTTCTTGTCTCGTGTTGTGTTCAAGTTCAGAATGTCTGTCGTCAAAACCCATGCAGAGctgacgtcatgtatagcatgtcactgtacagccactgcattCCAATTTAGACGCTATCAGTGTCCAAATGTTAAAACCCTATATGGTGACGAGTGTAAATCTGCATTTGTTTCTCTGTCTGGTCACTAGGCTGCTGTTGTTGAAGGTATTGGGCTAAAGTCAGTGGGTTTGGGTGTGTGtagtatgttggtgtgtgtgtagtgtgtgttcagtgtgtatcCAGAGTGTGACATCATAGGGCAGTGTGTGTGCAGTACCTGCATGACCTTGGTCTGTATCTCCTCCAGCTGGGATCGTTTGCTGCGTTGGCGACACACCTCCTGGTACTTAGTGTACTGTTCCCTGAGGGAGTCCAGCAGCTTCATGAC

Function

NR:

description
hypothetical protein cypCar_00030180

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU319795 True 579 lncRNA 0.46 2 60986538 60987139

Neighbor

gene id symbol gene type direction distance location
tgfbr2l LOC106586454 coding upstream 332225 60634539 ~ 60654313 (+)
LOC118964303 NA coding upstream 603186 60382674 ~ 60383352 (+)
myl1 LOC100135947 coding upstream 700458 60277245 ~ 60286080 (+)
LOC110505381 NA coding upstream 716639 60267642 ~ 60269899 (+)
erbb4b LOC106586446 coding upstream 934244 59870559 ~ 60052294 (+)
LOC110520315 ube2e3 coding downstream 344220 61331359 ~ 61370875 (+)
LOC110520316 itga4 coding downstream 488737 61475876 ~ 61505428 (+)
LOC110504376 LOC106586465 coding downstream 602919 61590058 ~ 61647253 (+)
LOC110520321 LOC106586467 coding downstream 661566 61648705 ~ 61663408 (+)
LOC110520324 LOC106586470 coding downstream 786294 61773433 ~ 61832413 (+)
G281957 NA non-coding upstream 19900 60966328 ~ 60966638 (+)
G281754 NA non-coding upstream 31203 60953140 ~ 60955335 (+)
G281680 NA non-coding upstream 63083 60849182 ~ 60923455 (+)
G281579 LOC106586456 non-coding upstream 259392 60723582 ~ 60727146 (+)
G281538 NA non-coding upstream 352159 60634084 ~ 60634379 (+)
G281976 NA non-coding downstream 4767 60991906 ~ 61027640 (+)
G282245 LOC106582271 non-coding downstream 219501 61206640 ~ 61223982 (+)
G282351 NA non-coding downstream 386589 61373728 ~ 61374361 (+)
G282350 NA non-coding downstream 387463 61374602 ~ 61374869 (+)
G282357 NA non-coding downstream 394085 61381224 ~ 61381473 (+)
G281714 NA other upstream 92760 60891524 ~ 60893778 (+)
G281591 LOC106586456 other upstream 229188 60740239 ~ 60757350 (+)
G281141 NA other upstream 695971 60287388 ~ 60303967 (+)
G280315 NA other upstream 932121 60052716 ~ 60054417 (+)
G277973 NA other upstream 3196206 57789734 ~ 57790332 (+)
G281996 NA other downstream 46627 61033766 ~ 61037105 (+)
G282707 il-1rii other downstream 970249 61957388 ~ 61964066 (+)
LOC110520339 lrrc63 other downstream 1206465 62193287 ~ 62200069 (+)
LOC110520346 htr2a other downstream 1380475 62367489 ~ 62408857 (+)
LOC110504398 LOC106586506 other downstream 1719192 62705451 ~ 62712740 (+)

Expression


Co-expression Network