G282417


Basic Information

Item Value
gene id G282417
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61506917 ~ 61511531 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU320311
acaggcctctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccactgtaaagtCGGCAGACcggcatcaaggcattcagttactcttcgattgaacattagaatgcgcaaaatgagtgacctaagcgactttgagcatgGCATGATCGTTGGTGCCAGGCGCGccagttccagtatctcagaaacggacggaatcctgggcttttcacgcacaacaGAGTCTAGGATTTAATGAGAATGAtgagacaaacaaaaaacatccagtcagcagcagtcctgtggacaaaacagctcgttgatgagaggtcgaaggagaatagcaagaatcgtgcaagctaagaGGTGGGCCACAAACAAGCAAATAATGACGCAGTACAACAGCATCTCAGAACATTGtcatggatgggctattgcagcagacgaccgcaccgggttccactcctatcagctaaaaacaagaacaagtggctccagtgggcacgcgatcaccaacactggacaactgatgagtggaaaaacattgcctggtccgacgaatcccggttcctgttacATCATGCTGAttgcagagtcaggatttggcagaAGCAGCATGAATCCATTGCCTCCTCCTGCCttgtgtcaacggtacaggctggtggcagtggtgtaatggtgatggaaatgttttcctggcacactttaggtcccttgataccaattgagcaacctttccatgccccaaagaattcaggTTTGTCTGGAGGCAAAGTGAggtccgacccggtactagatgggtgtaacTAATAACCTGGCCGTTGAGTGTATATTgatatatacacatctatatgTCAAATCTATATCATCAatagatgtgtatatatatagaagTGGATGGGACAGAGGTTTAAGCTTATTTATGTAGTATAGAACTGAAGACAACAGAAGGATGAGGAGAACAGTGTAGTGTCATCTGTGAAAAAAGGGGGCTGTTGTTGGGTGTCACTCAACTCACTGAATGACACATGAATGACACACTCCTCAAGGGGACagcaccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgaccctCTAGAGCAGGTGTATTCAACtctacgaggtccagagcctgctggttatctgttctacctgataatgaattgcacccacctgatgtcccaggtctaaatcagtccctgattagaggggaacaacaaagtgtgtgtgtgtgtgtgagcaactCATACCAGTCAGGTCGTTCAAGATTGACGTCGAAATTGGACATTTATCTATGTCCAGAGGATGTCAAGAAATGCCTTTTTATAATTGTTTTACCCTATCCCAAacattaacccttacctaaccattTGGAAGGAGTGCCTAAACTGAATGTttgaaccctatcccaaaccttaaccattaccttaaccattcggaccATAACTTCAAAGTTTGACGTTTGGAGACATGGAACGATACAGAGCAGCTGGAGCAAcaaaacactttgaaatgtgatGTTTGGAGCAACTTTGAAATGTGATTTTTGGAGCGACTTTGAAATTGATGTTGGAGTAACTTTGAAATTGGATGTTATGAGCAACTTCTAAATTTGACGTTTGCAGAACAGATGAACATctgattctgcagtgagactgtgagagctcgTTGCTCGTACACCATGCCAGCAGAAGTTTTCAATGCAGTCAGAAAAAAACAATGTAAAAGCTGGTTCTTCAGTGACTCAGAAATGTTCCTCAAGGCATAGCAGACATGCCAGGCCTTAAATGAAACACACGGAACACTGACCTTCCCATTTTTTCATTTTCATCCCTTTGGATTCTCTGTTGGAATCTTTGGAATCAGTGGATTGTGTTCTTACTGTAGCTGTAAGGGATTGGAACATTCAGGTTTAGGAGATGTGGTAtgccttgatgatgatgatgatgatgatgatgatgatgttttgTTGTTGAAAGAGGATTAGTAACATGTTTTTACTGCTTGTATTTTAAGGTTCAGGACAGTTAATTCAGGGAGTCAACCTTTCCTGACCAAGTTGTCAGTTATGACAAAAATAAAGGGGGCACATTCCAATTTGAATTTCAATCAAATGAAATtataattttatttttaataaataagTGTGTGGCGTGTAAAAATGAACTTTTTATatttaatgtgtctgtctgtcattggTTATTTGATGTCTAACATTCACAGTGTCGTACAGTAGTCATGCCTGTCGGTAACATTCAGTGGCAGTGAAACCTGAGGTTCTGCATTATAGATAAACTCTACATGGAGACCGTTTTAGGTTGTGTCTATAGACTCCTCTCTTGTAGACTGTTTTAACTGTAGACAGTCTGTAAACTGAAGACTGTTTCTTCTAGAGTACAGTAGGAAATCCTGTTTGTTACATTCAGTGGTAGTGTAGGTTGATATGTGTAAAGACTCCTCCACCCTTTAGACAGTTTTAAATGGTATCGATTCCACTCTACAGACAGTGTTAAATGCAGCTGCACTTGATGTGTGCCTCCTCTGCCTCCTCGATGTCCACTCCAAACAGGGTCAGGAGTTGAGGATGTACCCTGCTGGTGAAACAAACAGGGTCGGGAGTTGGGGATCTATCCTGGTGGTGAAACAAACAGGGTCGGGAGTTGGGGATCTATCCTAGTGGTGAAACAAATAAGATCGGGAGTTGGGGATCTATCCTGGTGGTGAAACAAACAGGGTCGGGAGTTGGGGATCTATCCTGGTGGTGAAACAAACAGGGTCGGGAGTTGGGGATCTATCCTGGTGGTGAAACAAACAGGGTCGGGAGTTGGGGATCTATCCTGCTGGTGAAACAAATAAATCAGTTAAAGAGGTTTTAAATGTCCCATATCTAACAGACAAATTAACAGTACTGCTAAATACATGATCAAAAAGACGGTGAAATTATACTGACCATGACCTCTAAGAACTCTCTTTGTGGGGTGTCAATTAAACCCAGATTAATATGACCATTAGATTACAGGTAGGGCTATACATAGTGAGCAGCGTTAGGTCACTGCTTTGGTAACATGTTATTTGAGACAGGGGTTGTATCCAGGTTGAAGGTCTATCTGACAGGTGCTATGGGGCTTTAGACCAGCTGAAGGATAGATTTGTACCTTATATATCGGCCAGTGTTCAcacagcgtctcagagtaggactgctgattTAGGATCACTTTCaggatcagcacttctactcagAGAGGCTTTATTAATTCAACCCCTAGGTCatttctgattgagccgacatatgcagcgatTACCGTCAATACAGTCTCTGCGAACACGGGAACATTATATTTAAATTTCAACCGTGCTACATCTCTGAACTTCAGCAATACAGATTGAATCCAGCCACTAACATATGAGGTTTATCAGTGCAGGTGCTGTGGTGCTTTGGGCCAAGTCAAGAACAAGAGCTGAACCTGATGAGTAGCTCTGAGGGCACCTCCCGTAGGTCTCCGTTTACGTTCCAAGGCTAGGTCCCCTCTGAGGAGATTATGGGTGTGTTCTTAGATTCACACTCTCCGTTGTCCTCGCAGACATCGTCAGACCAGCTCCTCTGAGAGCGGGGGCGAAGCCTCACAGCTCGCACCATGTGTGTCTCTACGAAGGAGAAACTgaactgggaggaagaggagcaggaggaggagattaCTTTATTGTCCAGTTGTACACAAGGAGGATCCAAGACCCCTCCCTAGGACCTCCAATAAGctttgagagggaggtgaggaataGAGGATGGAAGGGCTGAGGAAACAATACCATCGTCTCAGTCATTTCTAACTATAACCACTAGGGGGCAATGATGATGCACAGGGTGAATACATGTCCCCAACAACACAATTCCCTAAACAGCAATCACGCTGTTATATGACCCTGGTCACCAAGGTTACATCCGGTCTTGGACAAAAGTTTAAACCAGTTAAGCCAGTGGAAACATGAAAGTAGTTCATATGAATGACACAGCCTATCTTTTGTCGATGAATGATACAGGGAGTACATGGAGTACAGTTGTGTCTACATTTCCTACCACAACTCATATTGTTTGGCTTATGTATTCTGACTCCCCATCAGGTTTGTGGGatgtaaatatgtttttcatTAGTTGGCCTTCAGACTCAGTTTCCCAGAAATCGTTCAATAGAAGTCAGACAATAAATAGTCTGGTTCATTTGTTTGTCTGAGTCATCATTTTATCATTTACACATCCTGCTTGTTTTCATGGAAAATGGCCCAACAACACAAACATTAGTCAGATCTGCTCAGACggaaggacagacagaaagaaggaTGGACGGACGGACAGTATGGTTATGAAGTCCCCTCAAACTATTTGTTTACCCTGAACATTATGAAACCTGTTCTATTGAAactcacaaaaaaacaaaatgtctCTTTTCAGGTACAGTAGACTCCCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC103376870

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU320311 True 4533 lncRNA 0.43 2 61506917 61511531

Neighbor

gene id symbol gene type direction distance location
LOC110520316 itga4 coding upstream 1489 61475876 ~ 61505428 (+)
LOC110520315 ube2e3 coding upstream 136042 61331359 ~ 61370875 (+)
tgfbr2l LOC106586454 coding upstream 852604 60634539 ~ 60654313 (+)
LOC118964303 NA coding upstream 1123565 60382674 ~ 60383352 (+)
myl1 LOC100135947 coding upstream 1220837 60277245 ~ 60286080 (+)
LOC110504376 LOC106586465 coding downstream 78527 61590058 ~ 61647253 (+)
LOC110520321 LOC106586467 coding downstream 137174 61648705 ~ 61663408 (+)
LOC110520324 LOC106586470 coding downstream 261902 61773433 ~ 61832413 (+)
LOC110520325 LOC106586471 coding downstream 325134 61836665 ~ 61841206 (+)
LOC110520332 LOC106586482 coding downstream 609668 62121199 ~ 62126483 (+)
G282399 NA non-coding upstream 78338 61428283 ~ 61428579 (+)
G282387 NA non-coding upstream 96823 61409882 ~ 61410094 (+)
G282374 NA non-coding upstream 108456 61398045 ~ 61398461 (+)
G282373 NA non-coding upstream 108917 61397785 ~ 61398000 (+)
G282357 NA non-coding upstream 125444 61381224 ~ 61381473 (+)
G282458 NA non-coding downstream 16483 61528014 ~ 61528255 (+)
G282460 LOC106586556 non-coding downstream 23220 61534751 ~ 61535027 (+)
G282461 NA non-coding downstream 25030 61536561 ~ 61536772 (+)
G282462 NA non-coding downstream 26030 61537561 ~ 61537765 (+)
G282463 NA non-coding downstream 26424 61537955 ~ 61538220 (+)
G281996 NA other upstream 469812 61033766 ~ 61037105 (+)
G281714 NA other upstream 613139 60891524 ~ 60893778 (+)
G281591 LOC106586456 other upstream 749567 60740239 ~ 60757350 (+)
G281141 NA other upstream 1216350 60287388 ~ 60303967 (+)
G280315 NA other upstream 1452500 60052716 ~ 60054417 (+)
G282707 il-1rii other downstream 445857 61957388 ~ 61964066 (+)
LOC110520339 lrrc63 other downstream 682073 62193287 ~ 62200069 (+)
LOC110520346 htr2a other downstream 856083 62367489 ~ 62408857 (+)
LOC110504398 LOC106586506 other downstream 1194800 62705451 ~ 62712740 (+)
G284313 NA other downstream 1504795 63016326 ~ 63022591 (+)

Expression


Co-expression Network