G282460 (LOC106586556)


Basic Information

Item Value
gene id G282460
gene name LOC106586556
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61534751 ~ 61535027 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU320369
ggtactaaacgctgtcttccactcgtctccctcccggatacgcaccaggttatgctcactcctgagatccagtttctTGAAGAAGTGCGCCccatgcattgactcaatcgccgtggcaataagaggtagcgggtaactgtacctcaccgtgatttgattgagacccctatagtcaatgcacgggcgcagacctccatccttcttcttcacaaaaaatgtaCTTGAGTAGGCGTGTGAAGAGGaagaccgaatgtacccctgacgcagggattcagag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU320369 True 277 lncRNA 0.51 1 61534751 61535027

Neighbor

gene id symbol gene type direction distance location
LOC110520316 itga4 coding upstream 29323 61475876 ~ 61505428 (+)
LOC110520315 ube2e3 coding upstream 163876 61331359 ~ 61370875 (+)
tgfbr2l LOC106586454 coding upstream 880438 60634539 ~ 60654313 (+)
LOC118964303 NA coding upstream 1151399 60382674 ~ 60383352 (+)
myl1 LOC100135947 coding upstream 1248671 60277245 ~ 60286080 (+)
LOC110504376 LOC106586465 coding downstream 55031 61590058 ~ 61647253 (+)
LOC110520321 LOC106586467 coding downstream 113678 61648705 ~ 61663408 (+)
LOC110520324 LOC106586470 coding downstream 238406 61773433 ~ 61832413 (+)
LOC110520325 LOC106586471 coding downstream 301638 61836665 ~ 61841206 (+)
LOC110520332 LOC106586482 coding downstream 586172 62121199 ~ 62126483 (+)
G282458 NA non-coding upstream 6496 61528014 ~ 61528255 (+)
G282417 NA non-coding upstream 23220 61506917 ~ 61511531 (+)
G282399 NA non-coding upstream 106172 61428283 ~ 61428579 (+)
G282387 NA non-coding upstream 124657 61409882 ~ 61410094 (+)
G282374 NA non-coding upstream 136290 61398045 ~ 61398461 (+)
G282461 NA non-coding downstream 1534 61536561 ~ 61536772 (+)
G282462 NA non-coding downstream 2534 61537561 ~ 61537765 (+)
G282463 NA non-coding downstream 2928 61537955 ~ 61538220 (+)
G282467 NA non-coding downstream 6439 61541466 ~ 61541691 (+)
G282468 NA non-coding downstream 9179 61544206 ~ 61544451 (+)
G281996 NA other upstream 497646 61033766 ~ 61037105 (+)
G281714 NA other upstream 640973 60891524 ~ 60893778 (+)
G281591 LOC106586456 other upstream 777401 60740239 ~ 60757350 (+)
G281141 NA other upstream 1244184 60287388 ~ 60303967 (+)
G280315 NA other upstream 1480334 60052716 ~ 60054417 (+)
G282707 il-1rii other downstream 422361 61957388 ~ 61964066 (+)
LOC110520339 lrrc63 other downstream 658577 62193287 ~ 62200069 (+)
LOC110520346 htr2a other downstream 832587 62367489 ~ 62408857 (+)
LOC110504398 LOC106586506 other downstream 1171304 62705451 ~ 62712740 (+)
G284313 NA other downstream 1481299 63016326 ~ 63022591 (+)

Expression


Co-expression Network