G283251


Basic Information

Item Value
gene id G283251
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61643098 ~ 61647279 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU321251
AAAACGACCTGCTCCCGACACCCATAATTCATGAATAAGATTTATTTGATTTCATTCATCATTAATGTAACCACAATGTTCAAATACATACAAATAAATAACATGTTTATTTGTGGATGATGTAGTAGTCTGCAAGGACTGACCAAAACTTCAATTTAAGTGAAGTGGCAAAACAACAACATTCTGACATGCAGTCCTCAATGAGGACTGTGATGAACCATAAATAACCATAAATGACCCATTTCTCTGTGTCTGGCATCTGTCTAGGAACGGCAGATGATCCAAACTAGAATGAGAAGACAAAACACAGTATGCTGATGTAATGTTCACAATGTGTCAACGTGCTGTACACAGAGAAACCATAATAAACAATATAAAGGAGCGCTTAAGAGAAAAGTAATAACCTCAGCAACACAGACCTGTTATTAACACCACACCAAGTCAAACTGAGTGACACACAAACAGGCCCACAGTCCCAGTGCCCATGGTTGGGGCAGttctgcgtctcaaatggcactttattccctactgcactactttagaccctggttaaaagtagtgcactatgtagggaataggaggccatttgAGACGCAACCCAGTGTGTTTTCGCCTTGCCGTCAATGGTGCCCATTTATGCTCAGGGATCATTCTGTGCCTCTAAACACGTACGACCTAGGAACACCTGATACCTCTGGAGGAAATGCCAGAGAATTAGAGGCAGGGGCTGGAGGTGTGGAGCGGGCCGGACAAGCGACTGGGTGCCACCTCAGGGGTGATGCACAGTTCAGCATATAGGGGAAAAGAGAAGTTATAAGCTGCATGTTCGTCTGTGCTTGACCATTAGTAAGTACAAGTAAGCTACAGATAAGTACAGATCATCTACAGCTATGTAGTAAGTGGGTCATTCCACCAAATTAGTCCCTTTTGCATTCCTTCAATGTTTTAGGTGCACCAATATTTAATTTTAACAAACATTATGTACATAATTTGTCCAAACCGGAAACAACAAGTTTAATTGGGTTGCATCAACTACTGCTTTTAAAAAGCACCACTTAAATGTATGCATTATACTCATTTTACACCTTtgtcctgggttgtgttcattagggtaaCAATTGAAAACGTTATTTTTAAAGATTCTACAGAAAGTaagtccaaatcaaatcaaatttagtCCCTGCACGATCCAATCAATTTTcctctgtttggtgcctaatgaatacgacccagatGCGTGTTTTTGTTAGTGTCTcacattaaaaacaaacaaaaattcaTACCTGTATTTCTTATCTTAAATAGACGTTAAAAACCACTAAATGTATTTGTCCTGAGATATTTTCTTTAAAGGGgtaatagagacagacaggtggccTGAACTGGAGAGTAGAAACACAGCAGAATTAACAGTATCTTGTCTGATAGAGATCGATATAGTCTTTTTACTAATGATATTTTCAAGTTCAGAGACAGTGAAATGTATTGCATAGTTAgttccagacctgggttcaaatactttaTCTGACCTTGCCTGGCTTAATGAGCCATTAGAATATTCCCAAAACGgtaaaccctgcccatctggcactACAGGCAAGCTGAGCAAAACAATCAAAGTATTTAAAAgacttcaaatagtatttgaaaccaGGTCTGATTAGTTCCTCATAGAGATGGCATTAGAAGAAGAGGGCATGGTAATTTACAGCTGACACTAAATTCCCATACAACCATAATCATCTTCTAACTCTATTTTTCACCTTTAGGACAAGAGATGCACCCTGATCCACATCTATGTGCTTAAATACAACCCATACACAACGTCAGGATCATATCATAACATAATAACAAATGTCACCAACAACCAGAGACGGAATTGGAGAAAAGTCACTCTGGGAACTTACTGATCTTAGAATTTACCGTAAAGTAACGACCGAGTGAAAATATAACTTTTAAAAGtttatattctgttaactcatatccCCCCCAAATTGTTGACTCTTCCTATGCTTATATGTTGCCAGCAttaattgaaaaaaataaaacacaaaaatgCTTGCCATTTCCTCATAGAACATGATGTCATCtccatgaggaggaggagatagccaatcagcggtctactagcattaatatttttaatgaccgggtatatgcccacaccattcttttgttggggtacacccataacattccaacacagaaaaactGCTTTTTAACACacttaataaaaaaaatagaagGACAACTATTTAGCTCATATTGTCAGTAATTATAGGTCATGTTTCActgaaatctggaaacactgggcaGTTAACTTAAACACATTTTGTACATGTCAAAATTATTTTACTTTGCGAACTCTAGTTCACCTCCAATTACACCCCTGTCGACAACACATGAGTAATGCAGTAGTTATTCTGAGTGTTTGAAATAGGACGGTTAAGACAGAGAACAAGACAGTTCACTATAACAGCAAGTACACAGCAGCATTAGTGTCTCCAAGGCACACAGCATACACGTCTTAAGATACAAGGGAACTCATTTATAAACCTTTGGCAGGTACAAAATAAATCTCAAAAAATGTGTGTGCCAATTTTCACACAAAAGTTGGCATTTATAAAAACTGAACTTGATGTAAAAACGTGCTCACCTTCTCGCAGACTTTAGACAATGCTTATGCAGATTCTAGTGGTTGAAATATTGTATTGCAAGCAGGcaagtacatttatattttgtgCAAATGGAGGATATGGACACGCTTATGAATAACAATAAACAGGTTAATAACAAGATGCAATCATTTTCCGTTAGTGAGTAAAGAGAAAATATATTTAGTTTATCTTTGCATTTTAAAATAATTAGACAATCATCTATCTATATCCCTGGCTACTATGTATTATTTATTTCCATGATCATTGCATAATCAATTCCTCACCTTTTCTGTGATGGTGTCATACTCACGAGGTAGCCTATATCGGGCAACAACAGGAATAGCATTCATCTCATATCTGCTTTAATTggacccacttcacagtagtaaaTAGATAAGCTATTTCAAGTATTTTGCTCTATGCCATCCGATCCAGAGCGCAGTAGTATTAACGGTGGAACAGACGGGTTGCAGGTTACTTCTGTAGCCCACATCTGAATACTGTAATTTAACATTTTTTGAGTAGACAATATTGCATTTATACACATAATATATATTTTCATAACTATTGCAGAATAAATTCTTCACCTTTTCTGGACATTATTGGTCCATATTTCTGAAGTAACCATAGCCTACAAAAAATGACCATGCGCATCTCTCATTTAATTAAGTCTATTAGATAAGCTATTATTTCAAGTATTAAATTAAAATTTACCAGGTGAACAGGTGCATTGTAGTGTGCATGTCTACCACTGTAAGTAGAGAATGTTTCAGAATTCGAGGGCAGTGTAGCATCGTTCAGAGAAAAAGTCATTGCAAAACATTAGGCCCAATTAAATTAAAACGGTCTGCTTACAGCTCAACAGCAATTTGCAATAGTTGTCGTCTTTCATTAACTTTTTGTCTATCAGATAGCCTAGGCCTACAGCAAATGTCATTGCAAAAGTTTAACATTCTGCAATCACCTCCAAAGACATTTGATCAAGTTCGCTATTGCTATTTCCTTTAGAAAACTGCTCAAACACTTCGAAAGTATACAGCGAATAAGGGCGTTTTTGTCACCATAAAAGGTAGATGGGCGTTTTTCAGACAGAGTACTGATGCTCTTTCACTCACAGTTTCAGGACGGGTGTGATTTATAACAGTAAACATATGTATGCCAAGTTTATAAAACTCTATTTTTGTATGTATGCAGTCTTTTCAGAAATGGCACATGCAGATATTCAGATATTTAGTGTGAAATTTACGCAacggttataaatgaggccccagagtATCTGTCAGTCAGCAGACTACTGAGGAGAAGAAAccattgaaataaaaaaaaactctaCCTATATGGTTGAAAACACAGTGTTAAGGTATCTGCCATCATCAGACTCTCTGGAAATAGTAGAAACAGTGGTAAAAAGGTTGTTGGGCTGTTCAGTGTATGGCTTCACCAGTGTTCAGGTTGAGTAGAATGGGTAGACTTTACCAGTGGTTATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU321251 True 4145 lncRNA 0.37 2 61643098 61647279

Neighbor

gene id symbol gene type direction distance location
LOC110520317 ndf1 coding downstream 60038 61578579 ~ 61583060 (-)
LOC110520318 NA coding downstream 94846 61506974 ~ 61548252 (-)
LOC118964366 NA coding downstream 372526 61270516 ~ 61270572 (-)
LOC110520314 LOC106586461 coding downstream 388460 61202903 ~ 61254638 (-)
LOC110520312 LOC106586462 coding downstream 451225 61034879 ~ 61191873 (-)
LOC110520320 LOC106586468 coding upstream 16426 61663705 ~ 61728601 (-)
LOC110520322 LOC106586411 coding upstream 121224 61768503 ~ 61772972 (-)
il-1r1 il-1r1 coding upstream 242830 61890109 ~ 61916561 (-)
zmp:0000000936 LOC106586476 coding upstream 272615 61919894 ~ 61956548 (-)
il-1rii il-1rii coding upstream 310092 61957371 ~ 61964014 (-)
G283224 NA non-coding downstream 39901 61602757 ~ 61603197 (-)
G283198 NA non-coding downstream 74623 61567975 ~ 61568475 (-)
G283197 NA non-coding downstream 80707 61562163 ~ 61562391 (-)
G283195 NA non-coding downstream 88370 61552148 ~ 61554728 (-)
G283184 NA non-coding downstream 108456 61534440 ~ 61534642 (-)
G283256 NA non-coding upstream 6046 61653325 ~ 61689575 (-)
G283282 NA non-coding upstream 45939 61693218 ~ 61698319 (-)
G283373 NA non-coding upstream 198136 61845415 ~ 61849699 (-)
G283398 NA non-coding upstream 250454 61897733 ~ 61905194 (-)
G283541 LOC106586480 non-coding upstream 501038 62148317 ~ 62151490 (-)
G277749 LOC106586429 other downstream 4053915 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 4239523 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 4345336 57270782 ~ 57297762 (-)
G275250 NA other downstream 6231611 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 6523886 55068639 ~ 55122013 (-)
G284018 NA other upstream 1067296 62714575 ~ 62715177 (-)
G286522 NA other upstream 3322270 64969549 ~ 64970755 (-)
G286580 marco other upstream 3366980 65014259 ~ 65029736 (-)
G286638 NA other upstream 3407421 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 3587901 65235180 ~ 65235908 (-)

Expression


Co-expression Network