G282786


Basic Information

Item Value
gene id G282786
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62126644 ~ 62130112 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU320751
TGATGGTTACACAGATCACAGCGAACACTTTATTTAAAAAACTGTCAACTGTGATTATGGCATGGGTGAATGTCTACTTACATTTAATTTTACAATTAGATGTATACATTTATATTGTCATATTATAAAACGTATATGTAAAAAAGGACAATATTCAACCAAAGGTTCTGTAGAAACCCTATTGAAGAGTGATCTGATTTAGGAGAATGATCACTTAACACGAGATCCTTTAAATCGGGAAGGCATAGAACCGACGGAGCCTCTCTGCGGTAAGCATAGGAAGAGGTGTGCATTTTAATACATCCCCACAGGAGAAAGCCATCCCCATTCAGAGACCGTGGAGCATTAGATGAATGTTATTTGGAGGTTAGGGGGCTAGTTCTCTTCTGAGTCACTGTCTTTCCGTGTGGGGAGAGTGGATCGAATCGACGACATTAGCTTGTCTTCAATCTGCTTCTTGGGGTTTTCTTCCAGGTCTGTCTTGACAGCGCCAGATTCCGATAACCTCCACCACCTCCTTGATGTAGTCCTGCCCAGATATCTCCACTACTTCACCGAAGCAATTCTTTATCTGGGTGGCTTTCCATTCTGCAAGCCTCTTCTGTCTGTACATCTCGATGGCGGCCTCGTCCTCTTCACTGAAGTCATCCTCGTTCTCATCCAGCTCGTCCAGAGTCATGCTCTCATAGGTTTTCAACAGATGACTGCTCAAGAACTATCTGCTTCTCTAGAGCTTCCTCCTCAACCTCATCCTGAGTTCTCTCCTTGGGAGGAAGGACCCCCTTCTTTCTCAGGATGTCATTCCACTCTGTATCTGCATTAGGGTCCTGCATTTTTTTAACCGTTCAAAACAGACGCTGAAAACACCACTGCTCTTCCCAGACACGGAAATAGAAGGACCTCACCCATATTTATTCCGGAGTAAAACAAGATCTTTAATGTGACAAAACTTAAATACTTGTCAGATATCTCAAATATAGAATCGTTACAAaataatttattttctgaggaCAAATCTATTCCATCACCTGTTTTATATGTATTATTATCATAAACCTGGCTAGGGCAAGACATTCAAGGGACAATAATAAAGGTTGCACCAATATCCGGTTTAGGTCCTGTATGTCTATATTAGGAGTGGGAAAGCTGTACTACATTCCATGTGTGGCATCTGATTGAGACAACAGCTGCACCTGAAAATCACACTGCTGTGCTGTCAGTGTCTGGGTTGACCATACATTTATGGGGGTTGCATAGAGGTCCAAACATCTCTGAAAATTGTTGGCCTGTTTTTTGGTGTGTAGATGTGCTTCAATATGATATCCTTAtactgtatttgtttattttcaatGTAGTTATGATGACTATAGCAAGTATAGATGATGCGTTTATGAATCATATACTTAGGTACATGTTCTACTGTGCAAATATATTTTCAAATCCTTTATTATGGGTATGGTTATAAATCTTCATGTCAGTCTTGATCTTGTGAAACTCAATAAGAT

Function

NR:

description
phosducin-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU320751 True 1505 lncRNA 0.40 5 62126644 62130112

Neighbor

gene id symbol gene type direction distance location
LOC110520332 LOC106586482 coding upstream 161 62121199 ~ 62126483 (+)
LOC110520325 LOC106586471 coding upstream 285438 61836665 ~ 61841206 (+)
LOC110520324 LOC106586470 coding upstream 294231 61773433 ~ 61832413 (+)
LOC110520321 LOC106586467 coding upstream 463236 61648705 ~ 61663408 (+)
LOC110504376 LOC106586465 coding upstream 479391 61590058 ~ 61647253 (+)
cnot11 LOC106586484 coding downstream 44473 62174585 ~ 62180282 (+)
LOC110520339 lrrc63 coding downstream 63175 62193287 ~ 62200069 (+)
LOC110520341 LOC106586488 coding downstream 70719 62200831 ~ 62203750 (+)
med4 med4 coding downstream 119347 62249459 ~ 62254811 (+)
LOC110520344 sucla2 coding downstream 124848 62254960 ~ 62272829 (+)
G282805 NA non-coding upstream 5631 62113453 ~ 62121013 (+)
G282725 NA non-coding upstream 123622 62002667 ~ 62003022 (+)
G282712 NA non-coding upstream 144163 61982071 ~ 61982481 (+)
G282707 il-1rii non-coding upstream 162578 61957388 ~ 61964066 (+)
G282815 LOC106575914 non-coding downstream 34771 62164883 ~ 62174362 (+)
G282822 NA non-coding downstream 39634 62169746 ~ 62171892 (+)
G282907 NA non-coding downstream 173371 62303483 ~ 62320393 (+)
G282976 NA non-coding downstream 279111 62409223 ~ 62409441 (+)
LOC110520349 lrch1 non-coding downstream 293302 62423414 ~ 62430935 (+)
G281996 NA other upstream 1089539 61033766 ~ 61037105 (+)
G281714 NA other upstream 1232866 60891524 ~ 60893778 (+)
G281591 LOC106586456 other upstream 1369294 60740239 ~ 60757350 (+)
G281141 NA other upstream 1836077 60287388 ~ 60303967 (+)
LOC110520346 htr2a other downstream 237502 62367489 ~ 62408857 (+)
LOC110504398 LOC106586506 other downstream 576219 62705451 ~ 62712740 (+)
G284313 NA other downstream 886214 63016326 ~ 63022591 (+)
LOC110520364 LOC106586514 other downstream 995778 63124380 ~ 63129015 (+)

Expression


Co-expression Network