G283991


Basic Information

Item Value
gene id G283991
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62653440 ~ 62654877 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU322034
GGGGGAGGCTTAGTGATGAGTGAGAAAAGAGAGATTGGAGGAAGGAGCAAATGTTTAATCACTACATCTCCAGCTTCACATTTCCCCTCAATTTCTCTCCAGAACAGCACTTTAATTTCCACCACAAAGAGCACTGATGATTTTCTTCTCATAATTCATGAAGCACACaggacgaggagaggagaggagcacagGGTCTTTAAACATGTAACttcaatcaaatgtttttataaaaccctttttacatcagcagatgtcacacagtgcttatacagaaacccagcctaaaacgcctaagagcaagcaatgcagatgtagaagcatgtagctaggaaaaactcaattgaaaggcaggaacctaggtaGAAAGCTagagaaccaggctctgaggggtgggcagtcctcttctggctgtgccggtggagattataacagaacatggccattaaggttagatcgttcttcaagatgttcaaacattcatagatgaccagtggTTATaggagggtgcaacaggtcagcacctcatgagtaaatgtcagttggcttttcataaccAAGGATTTTAGAGGTACAGTAAACTGAATACAGTAGATTACCGTAGAATGCACAATAaaatactgtacatttgttttaCAGCACACTGTAAGACCGTTCTGTAAATTCAACAGTAAACACTGTATAAtgcacagtaaaatacagtaaatgtgttttacagtaTTAATTATGGTGCATTGTAGGGAAATGTTGTGGGCGGTGAAAGAATCTGGCTAATTAACATATTTTAAGGAGTGTCTTGTAAGAGTCCCATGAGTGAGATTGCTGTACCCCCACAGAATATGGTAATATACTTTATTTTAGGAATTCTACAAACCTTGTCCTGAAACTTACTGGCCAATTGATGCCAGGCATTTATTGTAATTCAGAATCCACTACCATACCGCATTTTTGGAGTGCCAAAAACATTTTGAACGCTAGTGagtgcatggtattgttgtttctcACGAATACTTTTGAGGTGTCTTGTAAGAGGCTTTATCAATTGAAGTGATATGTGGGAGTGGTTCCCTATTAATTCCATGTATTTAGGGGACAGATCAGAGTGGTAGAAAGTCTCAAGAGTTTATTGATTGAGTGGCTAGATATGTCCTTTTGATCTTTTTTGCCCTGTAGTCACTGTCAGTCTAGAAGCCTTTGTTAAGGCCTAAAGTACAAGTGATATTTTCAACATCAACATCAGTTGGTATTCtgtaatatataatacaatattcACTATTAGCAATTGCTGATTTTATTTACAATACAATTCAACAATAAAGTACTGTATTGCTGTTTTGCTGTATAtttactgcagcatactgtaaatgatGATGCATTTTGGAAAAATATTGtgggaggagaaataatggttggctcattaacatattttaaggCGTGC
>TU322035
GGGGGAGGCTTAGTGATGAGTGAGAAAAGAGAGATTGGAGGAAGGAGCAAATGTTTAATCACTACATCTCCAGCTTCACATTTCCCCTCAATTTCTCTCCAGAACAGCACTTTAATTTCCACCACAAAGAGCACTGATGATTTTCTTCTCATAATTCATGAAGCACACaggacgaggagaggagaggagcacagGGTCTTTAAACATGTAACttcaatcaaatgtttttataaaaccctttttacatcagcagatgtcacacagtgcttatacagaaacccagcctaaaacgcctaagagcaagcaatgcagatgtagaagcatgtagctaggaaaaactcaattgaaaggcaggaacctaggtaGAAAGCTagagaaccaggctctgaggggtgggcagtcctcttctggctgtgccggtggagattataacagaacatggccattaaggttagatcgttcttcaagatgttcaaacattcatagatgaccagtggTTATaggagggtgcaacaggtcagcacctcatgagtaaatgtcagttggcttttcataaccAAGGATTTTAGAGGTACAGTAAACTGAATACAGTAGATTACCGTAGAATGCACAATAaaatactgtacatttgttttaCAGCACACTGTAAGACCGTTCTGTAAATTCAACAGTAAACACTGTATAAtgcacagtaaaataca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU322034 False 1438 lncRNA 0.38 1 62653440 62654877
TU322035 True 701 lncRNA 0.41 1 62654177 62654877

Neighbor

gene id symbol gene type direction distance location
LOC110520350 LOC106586501 coding downstream 57741 62547867 ~ 62595699 (-)
trnal-caa-2 NA coding downstream 110111 62543221 ~ 62543329 (-)
trnal-caa NA coding downstream 110742 62542589 ~ 62542698 (-)
LOC110520347 lrch1 coding downstream 120133 62425684 ~ 62533307 (-)
LOC110520342 itm2b coding downstream 403939 62231915 ~ 62249501 (-)
LOC110520353 LOC106586507 coding upstream 93547 62748424 ~ 62780312 (-)
LOC110520357 asmt coding upstream 178031 62832908 ~ 62841097 (-)
LOC110520356 LOC106586509 coding upstream 186583 62841460 ~ 62853914 (-)
LOC110520358 LOC106586406 coding upstream 201002 62855879 ~ 62858995 (-)
LOC110504409 sh3rf3 coding upstream 214871 62869748 ~ 62943518 (-)
G283990 NA non-coding downstream 331 62652678 ~ 62653109 (-)
G283989 NA non-coding downstream 789 62652041 ~ 62652651 (-)
G283974 NA non-coding downstream 28885 62624208 ~ 62624555 (-)
G283973 NA non-coding downstream 31847 62614671 ~ 62621593 (-)
G283899 NA non-coding downstream 173310 62478534 ~ 62480130 (-)
G283992 NA non-coding upstream 680 62655557 ~ 62655766 (-)
G283998 NA non-coding upstream 15297 62670174 ~ 62670400 (-)
G284012 LOC106586506 non-coding upstream 48902 62703779 ~ 62704102 (-)
G284023 NA non-coding upstream 70144 62725021 ~ 62726045 (-)
G284040 NA non-coding upstream 87644 62742521 ~ 62742930 (-)
G277749 LOC106586429 other downstream 5064257 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 5249865 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 5355678 57270782 ~ 57297762 (-)
G275250 NA other downstream 7241953 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 7534228 55068639 ~ 55122013 (-)
G284018 NA other upstream 59698 62714575 ~ 62715177 (-)
G286522 NA other upstream 2314672 64969549 ~ 64970755 (-)
G286580 marco other upstream 2359382 65014259 ~ 65029736 (-)
G286638 NA other upstream 2399823 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 2580303 65235180 ~ 65235908 (-)

Expression


Co-expression Network