G283840


Basic Information

Item Value
gene id G283840
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62670211 ~ 62670488 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU321875
catggctaaaggtcaatcagatttgtgaacatggtccctagctgtgtgttgccgctttccatgttgtctgtagcttgtgaggtgtggaaacactttgttgcttttatgaattttgtcttgctgctttttgttttatgttgctctgtctgtatgctacgtcttgcttgtcctatgttgctctgtctgtatgctatttcttgcttgtcctatgttgctatgtcttgcttgttctatgctgctattgtctatattgtaattgtttttaataacctgcccag

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU321875 True 278 lncRNA 0.40 1 62670211 62670488

Neighbor

gene id symbol gene type direction distance location
LOC110520352 LOC106586504 coding upstream 21696 62622919 ~ 62648515 (+)
LOC110504388 LOC106586502 coding upstream 57736 62598677 ~ 62612475 (+)
dhrs12 LOC106586499 coding upstream 122429 62543577 ~ 62547782 (+)
rubcnl rubcnl coding upstream 128180 62534646 ~ 62542031 (+)
LOC110520349 lrch1 coding upstream 243911 62423414 ~ 62430935 (+)
LOC118964306 LOC106586506 coding downstream 28399 62698887 ~ 62701213 (+)
LOC110504398 LOC106586506 coding downstream 34963 62705451 ~ 62712740 (+)
LOC110520355 LOC105016359 coding downstream 112758 62770924 ~ 62815230 (+)
LOC118964307 NA coding downstream 187725 62858213 ~ 62860498 (+)
LOC110520359 LOC106586511 coding downstream 276830 62947318 ~ 63007919 (+)
G283836 NA non-coding upstream 6502 62663380 ~ 62663709 (+)
G283833 NA non-coding upstream 15057 62654930 ~ 62655154 (+)
G283817 NA non-coding upstream 19867 62649487 ~ 62650344 (+)
G283800 NA non-coding upstream 91084 62578455 ~ 62579127 (+)
G283860 NA non-coding downstream 42655 62713143 ~ 62713848 (+)
G283859 NA non-coding downstream 44368 62714856 ~ 62715183 (+)
G283867 NA non-coding downstream 51807 62722295 ~ 62722740 (+)
G284045 NA non-coding downstream 77940 62748428 ~ 62750633 (+)
G284057 NA non-coding downstream 93433 62763921 ~ 62768887 (+)
LOC110520346 htr2a other upstream 261354 62367489 ~ 62408857 (+)
LOC110520339 lrrc63 other upstream 473260 62193287 ~ 62200069 (+)
G282707 il-1rii other upstream 708736 61957388 ~ 61964066 (+)
G281996 NA other upstream 1633106 61033766 ~ 61037105 (+)
G281714 NA other upstream 1776433 60891524 ~ 60893778 (+)
G284313 NA other downstream 345838 63016326 ~ 63022591 (+)
LOC110520364 LOC106586514 other downstream 455402 63124380 ~ 63129015 (+)
G284537 NA other downstream 596631 63267119 ~ 63312394 (+)
G284599 NA other downstream 720443 63390931 ~ 63391284 (+)

Expression


Co-expression Network